Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04894 ATGTTCCCTTATAGTTCAAACCCTTATCCTTCTTTTCTTCCTTCATCTTCTTCTTCTTCTTCACTCTTTCCTTTTCCTTTTCTTAATCCTGAAAATGCTTCTTCAAACAACAATAACAACACACTTTTTCATGATCCATTTTCTATTCCTTACATTCCAACTCATCTTCATCATCCTCATCCTCATCATCATCTTCATAACATTTCAAATATTCCAGAAACCCTAACAAATTTGGCTGTTTCACAAGAGAATCATAATAGTAGTCACAACAATAATAACAATATTGCGGTTTCGATGCCAAAACAAGATCCTTTAAGTCTTGGTGGTGGTTCTCACTATGGAATTTCTTGTTTCCTTGCTAAGAAACCCGCAAAAAAAGATAGGCACAGCAAGATTTACACTTCTCAAGGTTTGAGAGATCGTAGGGTTAGGCTTTCGATCGAGATCGCTCGAAAGTTTTTCGATCTTCAAGAGATGTTAGGGTTTGACAAAGCTAGCAACACACTTGATTGGCTTTTCACTAAATCTAAGAAAGCAATTAAGGATCTAACAAAAAGCAAGCAAAGAAACAACAATAGTGGTGATGCTAAAAGCTTCACATCTTCTTCAGATTGTGAAGATTCAGAAGTTGCTACTAATGATTCCTTAAACCTACAAAAGGAGGGTGCAGGAAGTAAAATTGAAGAGAAGAAGTTGAAAAGGGTTCAGATCAAAGAACCTGCTTGTGTTAGAGCAAGTAAGATGAAGGAGTCAAGAGAAAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGTAACAAGATTTCTACAAGGGGGGTGCAGGAAGTAGAATTGAAGAAAAAGTATGAAAATAGTAATAACAATAATCTTCAAGCTTTTCATCAATCAAGATCTTCATCACAAGATCATCAAATTGTGAGTAATAATGAAGCACAAAGAGATAATTTTAATGTTATTGAAGAATCAATAGTGATTAAAAGAAAGTTGAAGCCTTCTTTGATGCTTCATCATCATCATCAACAACAACAAAACCATGTGATCCCTAAGGAAGCAACAAGTTTCAACAACAATGGTGATTATCATTTCTTGCCTAATTCATCTCCAAATTGGGATGCTAATAATGGTAGTTCTTCCACTAATAGATCCAGCTTTTGTGCAATAGCTAGCATGAATCTTTCTACAGGGCTTCAAATCTTTGGAAAATCATGGGAGGAATGCAGCAATCCACGTCTACATTAG 1236 0.356 MFPYSSNPYPSFLPSSSSSSSLFPFPFLNPENASSNNNNNTLFHDPFSIPYIPTHLHHPHPHHHLHNISNIPETLTNLAVSQENHNSSHNNNNNIAVSMPKQDPLSLGGGSHYGISCFLAKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQEMLGFDKASNTLDWLFTKSKKAIKDLTKSKQRNNNSGDAKSFTSSSDCEDSEVATNDSLNLQKEGAGSKIEEKKLKRVQIKEPACVRASKMKESREKARARARERTSNKISTRGVQEVELKKKYENSNNNNLQAFHQSRSSSQDHQIVSNNEAQRDNFNVIEESIVIKRKLKPSLMLHHHHQQQQNHVIPKEATSFNNNGDYHFLPNSSPNWDANNGSSSTNRSSFCAIASMNLSTGLQIFGKSWEECSNPRLH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04894 411 Pfam TCP family transcription factor 124 268 IPR017887 -
Vivi2g04894 411 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 64 368 IPR005333 GO:0003700
Vivi2g04894 411 MobiDBLite consensus disorder prediction 186 217 - -
Vivi2g04894 411 MobiDBLite consensus disorder prediction 184 217 - -
Vivi2g04894 411 MobiDBLite consensus disorder prediction 244 268 - -
Vivi2g04894 411 ProSiteProfiles R domain profile. 249 266 IPR017888 -
Vivi2g04894 411 ProSiteProfiles TCP domain profile. 125 183 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04894 Vivi-Chr2 168854662 168857523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04894 121 195 TCP Transcription Factor Family AT1G67260 70.667 3.07e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi2g04894 TCP 5.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04894 - - cam:101499957 507.294