Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04877 ATGTCGCCGTCGCCTCCTCCGCCGTCTCCGCCACCTTCCGCCATTGATGCACTCATGTCCGGCGCTCGAGCAGCCTCCAAGAAGAAACATCCTCCGATCGAGAAGAAACGTAAAACTCCCCACTCCACCTCCCAAAACCCTAAAAACCTCAAAACCCTAAAAACTCTTCAAAAACCGGAAAAACCCGCCGCCGACCGAGAACCGCCGAAAAATATTCTCCACAAAGCACCGTCATCATCATCATCATCATTATCTTCTACTTCCAAGGAATTGATCGCCGATTTGAAAGAACGTGTTTTGCTGCTGAGTAATAGTCCATCGAAGTTCAATCCTTGCACGGTTGCATACTGGGAGAAAGGAAAACCAGTGCCATTCCTGTTTCTCTGTTTGGCATTCAATCTGATCGGTGAAGAGGATGGGAGAATTAAGAAGACGGAGATTGCTTGCAATCTTTTGAGGACTGTGATTCACGCTACACCTGAGGATCTCTTGCCGATCGTTTATCTCTTCTCCGGCACTCTTGCTCCACCACAGGAAGGGTTAGAATTGAGAATCGGAGAACCTACTATTAACACAGTGATCGCAGAAGCTTATGGTACCACTGAGAAACGCATCAAAGAGTGGATAAAGGAGGATAAATTGGAATTGGAGTTGGTTGCACAAAGTCGCCGTTTGTCTCAGTCTATGCTGCGGAAGCCTGAGTCATTGACTGTTAGGAAGGTTTTCAAGACCTTTCACCTTATTGCCAAAGAATCGGGAAAAAACAGTCAAGAGAAGAGAAAGAATCATATAAAGTCACTTCTTTTTGCTGCAACTGATCGTGAACCTGTATATTTATACCGTTTGCTAAAGAAAGACTTGAACATTAAATGTGATAAGCAAACTCTCTTGTCTGCATTGGGCCATGCTGCAGTGTACACTGAAGAGCATTCAAAAGTGCCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTGAAAGTATTGTTAAAGAAGCATATTCTGTTTCTCCTGACTTCAACAAAATAGTATCTGCACTTCTTACGGATGGTGTATGGCTACTTCCAAAGAAATGTAGTTTTACTGTTGGTGATCCTGTTCAGCCTATGCTGGCAAAACCAATCAATTGTGTATCTGATGCTCTAACGAAATTCAAGGATATAGAGATTGCATGTGAATACAAATATGACGGAGAGCGTGCTCAGATACATTATATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAACTCAAAACGGATCACTGGGGAGTTTCCTGATGTTGTTGCTGCAGTTTCCAGGTTAAGGAAAACAAATGTTTCTTCATTTGTTCTTGACTGTGAACTTGTTGCATATGATCGTGCAAAGCAGAAAATCCTTCCTTTGCAGACACTTAGTTCTCGGGCTCGTAAAGATGTAAATTTGAGTGACATAAAGGTTGATGTTTGTATATTTGCATTTGATTTGTTGTTTCTTAATGGACAAGCACTTCTTCAGAAGAACCTAAAAACCCGTCGAGAGTATCTCTATGCCTCTTTTGAGGAGGAATCTGGATTTCTTCAGTTTGGAACATCATTAACATCAAACGATGCCAAGGAAATTCAGAAATTTCTTGATCAAGCTGTGAGTGCAAGTTGTGAAGGGTTAATTTTTAAACCATTAAGTAAAAGTGCTACATATGTAACTTCCCAGAAGTCGCGCATTTGGCTAAAACTGAAGAAAGACTATCAGGATAAGATAGGGGACACACTAGATTTGGTACCTATTGGTGCTTACTATGGGCGTGGGAAACGTAAAGGAGTCTACGGTTCCTTTCTCCTAGCTTGCTATGACAACGAAAATGAAGAATTTCAAGCTATGTGTAACATAGGAACAGGATTCACTGATGCAAAGCTTAAAGAACTTTTTGATATCCTCCGTTCTAAAGTGATTATGAAGCCAAAGGCAAACTATCGATATAATGCAGAAAAAACCAAACCTGATGTCTGGTTTGAAGACAGTGAGGTCTTTGAGGTGAAAGCTTCAGACCTGACCTGTAGTTTGGAATACCAAGCTGCTATAGGCTTAGTATATTCGGATAAGGGCATATCTCTTCGATTTCCACGTTTAGTTAGAGTTCGTACAGCTAACAAAGCCCCTGACCAAGCCTCATCCTCTAAGCTGGTTGCTGAAATGTATAAAGCTCAAGCACAAAAACAAGAATCACACGGACAATCCAAGATGACGAATAAAGATGAAGATGAATCACATGAACAATCCAATATCATGGATGAAGATGAAAATGAAGATGATTGA 2289 0.4133 MSPSPPPPSPPPSAIDALMSGARAASKKKHPPIEKKRKTPHSTSQNPKNLKTLKTLQKPEKPAADREPPKNILHKAPSSSSSSLSSTSKELIADLKERVLLLSNSPSKFNPCTVAYWEKGKPVPFLFLCLAFNLIGEEDGRIKKTEIACNLLRTVIHATPEDLLPIVYLFSGTLAPPQEGLELRIGEPTINTVIAEAYGTTEKRIKEWIKEDKLELELVAQSRRLSQSMLRKPESLTVRKVFKTFHLIAKESGKNSQEKRKNHIKSLLFAATDREPVYLYRLLKKDLNIKCDKQTLLSALGHAAVYTEEHSKVPPEIQSPLEEAESIVKEAYSVSPDFNKIVSALLTDGVWLLPKKCSFTVGDPVQPMLAKPINCVSDALTKFKDIEIACEYKYDGERAQIHYMENGSVEIYSRNSKRITGEFPDVVAAVSRLRKTNVSSFVLDCELVAYDRAKQKILPLQTLSSRARKDVNLSDIKVDVCIFAFDLLFLNGQALLQKNLKTRREYLYASFEEESGFLQFGTSLTSNDAKEIQKFLDQAVSASCEGLIFKPLSKSATYVTSQKSRIWLKLKKDYQDKIGDTLDLVPIGAYYGRGKRKGVYGSFLLACYDNENEEFQAMCNIGTGFTDAKLKELFDILRSKVIMKPKANYRYNAEKTKPDVWFEDSEVFEVKASDLTCSLEYQAAIGLVYSDKGISLRFPRLVRVRTANKAPDQASSSKLVAEMYKAQAQKQESHGQSKMTNKDEDESHEQSNIMDEDENEDD 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04877 762 Gene3D DNA ligase/mRNA capping enzyme 396 521 - -
Vivi2g04877 762 ProSiteProfiles ATP-dependent DNA ligase family profile. 473 609 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi2g04877 762 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 391 399 IPR016059 GO:0003909
Vivi2g04877 762 CDD OBF_DNA_ligase_I 579 726 - -
Vivi2g04877 762 Gene3D - 576 740 IPR012340 -
Vivi2g04877 762 Gene3D - 102 369 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi2g04877 762 Pfam DNA ligase N terminus 124 300 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi2g04877 762 Gene3D - 377 575 - -
Vivi2g04877 762 MobiDBLite consensus disorder prediction 54 72 - -
Vivi2g04877 762 Pfam ATP dependent DNA ligase domain 367 571 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi2g04877 762 FunFam DNA ligase 576 737 - -
Vivi2g04877 762 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 104 357 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vivi2g04877 762 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 33 746 - -
Vivi2g04877 762 FunFam DNA ligase 396 521 - -
Vivi2g04877 762 Pfam ATP dependent DNA ligase C terminal region 596 706 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vivi2g04877 762 MobiDBLite consensus disorder prediction 1 87 - -
Vivi2g04877 762 CDD Adenylation_DNA_ligase_I_Euk 356 574 - -
Vivi2g04877 762 NCBIfam ATP-dependent DNA ligase 182 725 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vivi2g04877 762 SUPERFAMILY Nucleic acid-binding proteins 579 727 IPR012340 -
Vivi2g04877 762 MobiDBLite consensus disorder prediction 707 762 - -
Vivi2g04877 762 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 362 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04877 Vivi-Chr2 168643144 168650935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04877 12 734 Core DNA Replication Machinery Family AT1G08130 55.177 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04877 K10747 - gmx:100783155 870.922