Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04864 ATGGATCGGGTGGTGGCAACTGTGACTGGTTACCATGAGCCTGACCGATTCAACCTTATTAAGCTGATTTCGTATGCCGGTGCCAACTACGTTGGCATGATGTCAAAATCAATAACGCATCTGGTGTGTTGGAAGTTCGAAGGAAAGAAATATGATATTGCTCGAAAATTTAGAATACCTATAGTCAACCACCGTTGGGTTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCCTATATCATGCAAAGTGGACACGAAGTAGGGCCATTGTTAATGGAAGTTCCTGTCAGTTTTCAAGCAAATAGCTTGGCGAAGAAAAAAGTGGTTAGTGGCAGTTTATCTGATATTGGGTCTGAAAGGCAAAATAGTGACTTCAGTTCTTGGCTCTGTGGAATTTCTGTTTTGGAAGATTCTTCTATATTGAAAAAGCACGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAAGAAAGGTAAAAGAAATAGTGGGAATGAAGCAAGTACCGAAGCTAGACATTCTCGTAAAGGAAGAAGGGTTGGGAAAAATGATGGTCGAGTGGCGTTGGACCCTATAATTTTGGATTTAAGCACAGACGACCAGCTTAGCGAAATGGATAGGCTACACACTGAGGCTGCAGCTACCTCTTCCTTTTCTAGCCATGTCAATATCGAAAATATTCAAGAAAACAGTGAAGGACTTGATACTAGACTATCTAGGCAAAGTAGAACTATCGATGGAAGTTCAGATGGCATTGAACAGAGTAGAGATTCATATCATTTATCTACTCCCACAAATTCAACTTTGTTTATTGAAGATCCCCTTCCTTTGACACAGACTTCAGTAGACTTATGTTCCAGTGCTGCAGAAAAGTCCACCAGTGGTGACGTGGTTGATAATTTTGATGACTTACCTACTACAAAGGACTTGTCATGTGTTATATGTTTCACAGATTTCAGTTCGACAAGGGGGATTTTAGCTTGTGGACATCGGTTTTGTTTTCCATGCATCCAGGGTTGGGTTGATCACAGGATTGCATTGGGAAAAGTTTCAACCTGTCCGTTGTGCAAGGCAAGTATTACGGGGATCATGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTTTACTCCCAGACAATTCCATGTGACTACCCAGGCTCAGATATTTTTATCCCCATGGATCAAGAATTTCGAGACAATAACTTAGAGTCCTCTCGAGCAGGTGCTTGTGTAATCTGCAGTGGTCGAGAACCGGAGGATCTACTTCAGAACTGTGATGTTTGTCGAACTCGAAAAATTCATTCCTATTGCATGGACCCTCCTTTACTGCCTTGGACATGTAGTCCCTGCAAGGAACTTCGAATGATTTATCGTAACCGTTCATATTAG 1398 0.4185 MDRVVATVTGYHEPDRFNLIKLISYAGANYVGMMSKSITHLVCWKFEGKKYDIARKFRIPIVNHRWVEDCIKEGRRVPEDSYIMQSGHEVGPLLMEVPVSFQANSLAKKKVVSGSLSDIGSERQNSDFSSWLCGISVLEDSSILKKHEESSSYSSRLSKKGKRNSGNEASTEARHSRKGRRVGKNDGRVALDPIILDLSTDDQLSEMDRLHTEAAATSSFSSHVNIENIQENSEGLDTRLSRQSRTIDGSSDGIEQSRDSYHLSTPTNSTLFIEDPLPLTQTSVDLCSSAAEKSTSGDVVDNFDDLPTTKDLSCVICFTDFSSTRGILACGHRFCFPCIQGWVDHRIALGKVSTCPLCKASITGIMKVEHAATTDQKVYSQTIPCDYPGSDIFIPMDQEFRDNNLESSRAGACVICSGREPEDLLQNCDVCRTRKIHSYCMDPPLLPWTCSPCKELRMIYRNRSY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04864 465 PANTHER F5A8.9 PROTEIN 137 463 - -
Vivi2g04864 465 SUPERFAMILY BRCT domain 2 84 IPR036420 -
Vivi2g04864 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 464 IPR013083 -
Vivi2g04864 465 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Vivi2g04864 465 Gene3D BRCT domain 1 84 IPR036420 -
Vivi2g04864 465 SMART ring_2 314 358 IPR001841 -
Vivi2g04864 465 SMART BRCT_7 1 74 IPR001357 -
Vivi2g04864 465 MobiDBLite consensus disorder prediction 149 176 - -
Vivi2g04864 465 Pfam Ring finger domain 313 359 IPR001841 -
Vivi2g04864 465 SUPERFAMILY RING/U-box 304 365 - -
Vivi2g04864 465 Pfam twin BRCT domain 4 66 IPR001357 -
Vivi2g04864 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 384 IPR013083 -
Vivi2g04864 465 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Vivi2g04864 465 SUPERFAMILY FYVE/PHD zinc finger 405 456 IPR011011 -
Vivi2g04864 465 MobiDBLite consensus disorder prediction 215 261 - -
Vivi2g04864 465 ProSiteProfiles Zinc finger RING-type profile. 314 359 IPR001841 -
Vivi2g04864 465 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04864 Vivi-Chr2 168561555 168567385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04864 33 90 Core DNA Replication Machinery Family AT4G02110 47.458 5.23e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04864 - - cam:101495587 647.121