Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04863 ATGGAAAATGATGAACCCGTTCTTCCTCAATCTCACGGTTGTAACATTCAAGGTATGGATCGGGTGGTGGCAACTGTGACTGGTTACCATGAGCCTGACCGATTCAACCTTATTAAGCTGATTTCGTATGCCGGTGCCAACTACGTTGGCATGATGTCAAAATCAATAACGCATCTGGTGTGTTGGAAGTTCGAAGGAAAGAAATATGATATTGCTCGAAAATTTAGAATACCTATAGTCAACCACCGTTGGGTTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCCTATATCATGCAAAGTGGACACGAAGTAGGGCCATTGTTAATGGAAGTTCCTGTCAGTTTTCAAGCAAATAGCTTGGCGAAGAAAAAAGTGGTTAGTGGCAGTTTATCTGATATTGGGTCTGAAAGGCAAAATAGTGACTTCAGTTCTTGGCTCTGTGGAATTTCTGTTTTGGAAGATTCTTCTATATTGAAAAAGCACGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAAGAAAGGTAAAAGAAATAGTGGGAATGAAGCAAGTACCGAAGCTAGACATTCTCGTAAAGGAAGAAGGGTTGGGAAAAATGATGGTCGAGTGGCGTTGGACCCTATAATTTTGGATTTAAGCACAGACGACCAGCTTAGCGAAATGGATAGGCTACACACTGAGGCTGCAGCTACCTCTTCCTTTTCTAGCCATGTCAATATCGAAAATATTCAAGAAAACAGTGAAGGACTTGATACTAGACTATCTAGGCAAAGTAGAACTATCGATGGAAGTTCAGATGGCATTGAACAGAGTAGAGATTCATATCATTTATCTACTCCCACAAATTCAACTTTGTTTATTGAAGATCCCCTTCCTTTGACACAGACTTCAGTAGACTTATGTTCCAGTGCTGCAGAAAAGTCCACCAGTGGTGACGTGGTTGATAATTTTGATGACTTACCTACTACAAAGGACTTGTCATGTGTTATATGTTTCACAGATTTCAGTTCGACAAGGGGGATTTTAGCTTGTGGACATCGGTTTTGTTTTCCATGCATCCAGGGTTGGGTTGATCACAGGATTGCATTGGGAAAAGTTTCAACCTGTCCGTTGTGCAAGGCAAGTATTACGGGGATCATGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTTTACTCCCAGACAATTCCATGTGACTACCCAGGCTCAGATATTTTTATCCCCATGGATCAAGAATTTCGAGACAATAACTTAGAGTCCTCTCGAGCAGGTGCTTGTGTAATCTGCAGTGGTCGAGAACCGGAGGATCTACTTCAGAACTGTGATGTTTGTCGAACTCGAAAAATTCATTCCTATTGCATGGACCCTCCTTTACTGCCTTGGACATGTAGTCCCTGCAAGGAACTTCGAATGATTTATCGTAACCGTTCATATTAG 1452 0.418 MENDEPVLPQSHGCNIQGMDRVVATVTGYHEPDRFNLIKLISYAGANYVGMMSKSITHLVCWKFEGKKYDIARKFRIPIVNHRWVEDCIKEGRRVPEDSYIMQSGHEVGPLLMEVPVSFQANSLAKKKVVSGSLSDIGSERQNSDFSSWLCGISVLEDSSILKKHEESSSYSSRLSKKGKRNSGNEASTEARHSRKGRRVGKNDGRVALDPIILDLSTDDQLSEMDRLHTEAAATSSFSSHVNIENIQENSEGLDTRLSRQSRTIDGSSDGIEQSRDSYHLSTPTNSTLFIEDPLPLTQTSVDLCSSAAEKSTSGDVVDNFDDLPTTKDLSCVICFTDFSSTRGILACGHRFCFPCIQGWVDHRIALGKVSTCPLCKASITGIMKVEHAATTDQKVYSQTIPCDYPGSDIFIPMDQEFRDNNLESSRAGACVICSGREPEDLLQNCDVCRTRKIHSYCMDPPLLPWTCSPCKELRMIYRNRSY 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04863 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 402 IPR013083 -
Vivi2g04863 483 MobiDBLite consensus disorder prediction 167 194 - -
Vivi2g04863 483 SUPERFAMILY FYVE/PHD zinc finger 423 474 IPR011011 -
Vivi2g04863 483 ProSiteProfiles Zinc finger RING-type profile. 332 377 IPR001841 -
Vivi2g04863 483 SMART BRCT_7 16 92 IPR001357 -
Vivi2g04863 483 MobiDBLite consensus disorder prediction 233 279 - -
Vivi2g04863 483 MobiDBLite consensus disorder prediction 167 204 - -
Vivi2g04863 483 Pfam Ring finger domain 331 377 IPR001841 -
Vivi2g04863 483 ProSiteProfiles BRCT domain profile. 16 102 IPR001357 -
Vivi2g04863 483 PANTHER F5A8.9 PROTEIN 155 481 - -
Vivi2g04863 483 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Vivi2g04863 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 482 IPR013083 -
Vivi2g04863 483 SUPERFAMILY RING/U-box 322 383 - -
Vivi2g04863 483 Pfam twin BRCT domain 22 84 IPR001357 -
Vivi2g04863 483 SMART ring_2 332 376 IPR001841 -
Vivi2g04863 483 Gene3D BRCT domain 16 102 IPR036420 -
Vivi2g04863 483 SUPERFAMILY BRCT domain 18 102 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04863 Vivi-Chr2 168561551 168567385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04863 51 108 Core DNA Replication Machinery Family AT4G02110 47.458 5.23e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04863 - - cam:101495587 647.121