Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04842 ATGTCTCGTTATCGTTCTTTGAATCCCTTCGCAACAACTCACTCCGATTCCGGTTCCGATTCTGACGTTGACTCACTGAGTCATTTCGTCACCGACCTCTTCGAAAATCGTTCCCCCGCCGATCCGGTTTGTCCCTGGGATGACGACGGTGATGAAGATGATGATGAAAGTGACGTGAACCCTTTCTCGGGGTTTGCTTGCGATCAAGTGGGTGGTGATAATTCCACTGGGATTAGGGTTGTTGGGTTTGGTTCCGATTCGGAATCGAGTGGGCACGATGAAGAATTTGGTTATGAGGGAAGAAATGATTGGGATGATGATGAGAGGGTTGGTGGGTTGTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGGTGAGGAGAGGGTGAATGAGATTGAAGATTCTTCTAGTTTGTTGATTGGTGAGGTTGAGGTTGAGGTTGATGAAGTTGATGATGTTGATGATCAATCAGTAGCGTCTGGGTTCGAGGAGGATGAAGAGGAACACGGGGAAGAGGCGTTGCGATATTTGGAATGGGAGATTCTATTGGCTTTTAACAATTTCGAGAGGAGTGGTGGATTGGAACATGACGATGAGAATATTAATAATTTGTATTTAGCTGTTCAGGAAGGTTTTATTTCGGGGAACGCTGATTATGATATTCTTTTCAGTCAGTTATTGGAGAATGAGAGTGGTTTGAAGGGTAGTCCACCGGCGGCGAAGAGTTTTGTGGAGAATCTCCCTTTGGTGGAATTGACTGAGGAGGAGTTGAAAAAGAAGGATGTTATGTGTGCCATTTGTAAAGACGAGGTAATGGCGGAAGAGAAGGTGAGGAAGCTACCTTGCTCACATTGTTACCATGGAGATTGTATTTTGCCGTGGTTGAATATTCGCAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCAACTGATGATGCTGATTATGAGCAGAGTAAGGTTCATAGAATTGCCCGTGATCTGTTGGATTTTGCAGCATAG 1026 0.4503 MSRYRSLNPFATTHSDSGSDSDVDSLSHFVTDLFENRSPADPVCPWDDDGDEDDDESDVNPFSGFACDQVGGDNSTGIRVVGFGSDSESSGHDEEFGYEGRNDWDDDERVGGLCWDSLCLEDHRSILNDWEEVGEERVNEIEDSSSLLIGEVEVEVDEVDDVDDQSVASGFEEDEEEHGEEALRYLEWEILLAFNNFERSGGLEHDDENINNLYLAVQEGFISGNADYDILFSQLLENESGLKGSPPAAKSFVENLPLVELTEEELKKKDVMCAICKDEVMAEEKVRKLPCSHCYHGDCILPWLNIRNTCPVCRFELPTDDADYEQSKVHRIARDLLDFAA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04842 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 320 IPR013083 -
Vivi2g04842 341 FunFam E3 ubiquitin-protein ligase RING1-like 234 320 - -
Vivi2g04842 341 MobiDBLite consensus disorder prediction 45 59 - -
Vivi2g04842 341 SMART ring_2 273 313 IPR001841 -
Vivi2g04842 341 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Vivi2g04842 341 Pfam Ring finger domain 272 314 IPR001841 -
Vivi2g04842 341 MobiDBLite consensus disorder prediction 1 23 - -
Vivi2g04842 341 MobiDBLite consensus disorder prediction 36 73 - -
Vivi2g04842 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 172 318 - -
Vivi2g04842 341 SUPERFAMILY RING/U-box 260 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04842 Vivi-Chr2 168009141 168010970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04842 188 337 C3H Transcription Factor Family AT3G02340 48.485 2.26e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04842 - - vvo:131625572 625.935