Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04841 ATGTCTCGTTATCGTTCTTTGAATCCCTTCGCAACAACTCACTCCGATTCCGGTTCCGATTCTGACGTTGACTCACTGAGTCATTTCGTCACCGACCTCTTCGAAAATCGTTCCCCCGCCGATCCGGTTTGTCCCTGGGATGACGACGGTGATGAAGATGATGATGAAAGTGACGTGAACCCTTTCTCGGGGTTTGCTTGCGATCAAGGTGAACCGGAGTTAGAAGTAGCGTTAAATTTAGATTTAGGGTTTGATGATGAATTTGAAAATGAAGTTGACACTCGGTATAACGATAATTATGATGATGTTTTTGATTTTTCAGTGGGTGGTGATAATTCCACTGGGATTAGGGTTGTTGGGTTTGGTTCCGATTCGGAATCGAGTGGGCACGATGAAGAATTTGGTTATGAGGGAAGAAATGATTGGGATGATGATGAGAGGGTTGGTGGGTTGTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGGTGAGGAGAGGGTGAATGAGATTGAAGATTCTTCTAGTTTGTTGATTGGTGAGGTTGAGGTTGAGGTTGATGAAGTTGATGATGTTGATGATCAATCAGTAGCGTCTGGGTTCGAGGAGGATGAAGAGGAACACGGGGAAGAGGCGTTGCGATATTTGGAATGGGAGATTCTATTGGCTTTTAACAATTTCGAGAGGAGTGGTGGATTGGAACATGACGATGAGAATATTAATAATTTGTATTTAGCTGTTCAGGAAGGTTTTATTTCGGGGAACGCTGATTATGATATTCTTTTCAGTCAGTTATTGGAGAATGAGAGTGGTTTGAAGGGTAGTCCACCGGCGGCGAAGAGTTTTGTGGAGAATCTCCCTTTGGTGGAATTGACTGAGGAGGAGTTGAAAAAGAAGGATGTTATGTGTGCCATTTGTAAAGACGAGGTAATGGCGGAAGAGAAGGTGAGGAAGCTACCTTGCTCACATTGTTACCATGGAGATTGTATTTTGCCGTGGTTGAATATTCGCAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCAACTGATGATGCTGATTATGAGCAGAGTAAGGTTCATAGAATTGCCCGTGATCTGTTGGATTTTGCAGCATAG 1140 0.4368 MSRYRSLNPFATTHSDSGSDSDVDSLSHFVTDLFENRSPADPVCPWDDDGDEDDDESDVNPFSGFACDQGEPELEVALNLDLGFDDEFENEVDTRYNDNYDDVFDFSVGGDNSTGIRVVGFGSDSESSGHDEEFGYEGRNDWDDDERVGGLCWDSLCLEDHRSILNDWEEVGEERVNEIEDSSSLLIGEVEVEVDEVDDVDDQSVASGFEEDEEEHGEEALRYLEWEILLAFNNFERSGGLEHDDENINNLYLAVQEGFISGNADYDILFSQLLENESGLKGSPPAAKSFVENLPLVELTEEELKKKDVMCAICKDEVMAEEKVRKLPCSHCYHGDCILPWLNIRNTCPVCRFELPTDDADYEQSKVHRIARDLLDFAA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04841 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 211 356 - -
Vivi2g04841 379 MobiDBLite consensus disorder prediction 45 59 - -
Vivi2g04841 379 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
Vivi2g04841 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 358 IPR013083 -
Vivi2g04841 379 SMART ring_2 311 351 IPR001841 -
Vivi2g04841 379 MobiDBLite consensus disorder prediction 1 23 - -
Vivi2g04841 379 SUPERFAMILY RING/U-box 298 358 - -
Vivi2g04841 379 MobiDBLite consensus disorder prediction 36 66 - -
Vivi2g04841 379 FunFam E3 ubiquitin-protein ligase RING1-like 272 358 - -
Vivi2g04841 379 Pfam Ring finger domain 310 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04841 Vivi-Chr2 168009141 168010970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04841 226 375 C3H Transcription Factor Family AT3G02340 48.485 4.18e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04841 - - vvo:131625572 607.06