Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04787 ATGGAAGGATTAAGAAAAGGAGCTTGGAGTAGAGTGGAAGATGAACTTCTCACAAACTGTGTGAGACAACATGGAGAAGGGACATGGCACCTTGTGCCCATAAGAGCAGGCTTGAACAGATGCCGGAAAAGCTGTAGATTGAGGTGGTTGAATTATTTAAAACCAACAATCAAACGTGGAGATTTCTCAGATGATGAAGTTGACATGATGAAAAGATTGCATAGACTTTTGGGAAACAGATGGACCTTGATTGCTGGAAGACTGTCTGGAAGAACTCCTAATGATGTGAAAAATTACTGGAACACTCATTTTCCTAAAAAGGTCTCATCAAATAGGAAAAAATCTACAAATGCAAAGGAAAAGGAAATAATGAAACCTCATTTAGTGATAAAGCCACAGCCTTGGACTTTCTCGAGTAGTAATTCAGCCAGGTTGAAAATGAAGTTATTTAATGAAGATCAAAATGGGCCCAACAAACAGTTCCATATTCAAGCTGCATGTAATAATAATATAGATGATGGTAAGTGGTGGGAAGCATTAATGATTGATGATGACAAGGGAAAGAATCCAAAAGATGATGATGGAGACGGGATGCTAGACTTTAATGTGGATGAGTTTATGGCAAATGATAGTATTATTGAAGATCAAAGTTGGAGTGAGTTTCTTATTGATGTTAATTTTTTTGATTTTTAA 693 0.3665 MEGLRKGAWSRVEDELLTNCVRQHGEGTWHLVPIRAGLNRCRKSCRLRWLNYLKPTIKRGDFSDDEVDMMKRLHRLLGNRWTLIAGRLSGRTPNDVKNYWNTHFPKKVSSNRKKSTNAKEKEIMKPHLVIKPQPWTFSSSNSARLKMKLFNEDQNGPNKQFHIQAACNNNIDDGKWWEALMIDDDKGKNPKDDDGDGMLDFNVDEFMANDSIIEDQSWSEFLIDVNFFDF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04787 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Vivi2g04787 230 CDD SANT 8 53 IPR001005 -
Vivi2g04787 230 Gene3D - 6 58 - -
Vivi2g04787 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 140 - -
Vivi2g04787 230 CDD SANT 62 104 IPR001005 -
Vivi2g04787 230 FunFam Myb transcription factor 6 58 - -
Vivi2g04787 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Vivi2g04787 230 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vivi2g04787 230 Gene3D - 61 128 - -
Vivi2g04787 230 SUPERFAMILY Homeodomain-like 3 100 IPR009057 -
Vivi2g04787 230 Pfam Myb-like DNA-binding domain 59 103 IPR001005 -
Vivi2g04787 230 Pfam Myb-like DNA-binding domain 6 53 IPR001005 -
Vivi2g04787 230 SMART sant 5 55 IPR001005 -
Vivi2g04787 230 SMART sant 58 106 IPR001005 -
Vivi2g04787 230 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04787 Vivi-Chr2 166808063 166809580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04787 2 208 MYB Transcription Factor Family AT1G66370 45.022 3.60e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g04787 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04787 - K09422 cam:101494325 277.33