Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04765 ATGAGGAAGAGACAGGTGGTTGTGAGAAGATCAGAGGAACCACAAAGAAGTGCTGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCAGTTGATGGTTGCAGAGAGTTCATGGCAAATGGTGAAGAAGGAACAGATGGTGCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAATCTGTCTCTGAATGTTCAAATGGTACTTGA 255 0.4235 MRKRQVVVRRSEEPQRSAVKYGECQKNHAANVGGYAVDGCREFMANGEEGTDGALTCAACGCHRNFHKRELVETESVSECSNGT 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04765 84 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Vivi2g04765 84 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 73 - -
Vivi2g04765 84 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
Vivi2g04765 84 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04765 Vivi-Chr2 166042475 166043096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04765 1 82 Zinc finger-homeobox gene family AT3G28917 63.158 5.63e-33 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi2g04765 ZF-HD_dimer 8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04765 - - mnt:21396779 142.895