Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04764 ATGGTGAGACCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGATATCATTTTGGTTTCTTATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACTAATACTGGTTTGTTAAGGTGTAGTAAGAGTTGCAGACTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGGGGTAATTTCACTGATCAAGAGGAGAAAATGATTATCCATCTTCAAGCTCTTTTAGGAAATAGATGGGCTGCAATAGCTGCATACCTTCCACAAAGAACAGATAATGACATAAAAAATTATTGGAACACTTATTTGAAGAAAAAGCTCAAGAAATTAGAAACAAACACTTCTTCTGAATCATGTTTAGGACAAGATGATTTCTCCATTTCTCAACCAATAGCTAGAGGACAATGGGAAAGAAGACTTCAAACCAACATTCACATGGCCAAAAAAGCACTTAGTGAAGCTCTTTCACCAGAAAAAAGCACTTCTACCAACTTATTTTCACCTCTTGAATCTAGCTTTTCTAATGAAGCTTCTTTTTGTTCAACAAAACCAATAACACATACACAAACACAAACACAATCTCTGTGTTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGTTGGATGAAAAATAAACCAAAAGGGTCAAATGGTAATAACACAAAAGTGATTCAAAAATATGAAACAAGTGCTTCTAGTGAAGGGATTGAAAAAGGGTCATCAACAATTTCTGAGAATTTTGAGTCTTTGTTTGGTTATGAGGATTTTGATTCTTCAAATTCAGATTCTACTACACTTTTTCAAGATGAGAGCAAAGGTGAAATTGGTGAAATTATGCCATTCTCTATGCTTGAGAAATGGCTTCTAGATGATGGTGGTTGTCAAGAAAAAGTTAACCTTAGTGAAATTAATTGCATGTTTTAA 960 0.349 MVRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLETNTSSESCLGQDDFSISQPIARGQWERRLQTNIHMAKKALSEALSPEKSTSTNLFSPLESSFSNEASFCSTKPITHTQTQTQSLCYASSADNIARLLKGWMKNKPKGSNGNNTKVIQKYETSASSEGIEKGSSTISENFESLFGYEDFDSSNSDSTTLFQDESKGEIGEIMPFSMLEKWLLDDGGCQEKVNLSEINCMF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04764 319 CDD SANT 16 61 IPR001005 -
Vivi2g04764 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi2g04764 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g04764 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Vivi2g04764 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g04764 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g04764 319 CDD SANT 69 111 IPR001005 -
Vivi2g04764 319 SMART sant 66 114 IPR001005 -
Vivi2g04764 319 SMART sant 13 63 IPR001005 -
Vivi2g04764 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vivi2g04764 319 FunFam MYB-related transcription factor 13 66 - -
Vivi2g04764 319 Gene3D - 13 66 - -
Vivi2g04764 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g04764 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g04764 319 Gene3D - 68 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04764 Vivi-Chr2 165985311 165987625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04764 1 303 MYB Transcription Factor Family AT5G62470 50.867 4.08e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g04764 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04764 K09422 - gmx:778078 386.726