Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04759 ATGGAAGAAAGAACTGAGATGGATAATATTAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCTACAGATGAAGAACTTGTTGCTTTTTATCTCAAGAGAAAAATTCAACAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTTGATATTTACAAATTTGATCCATGGGATCTTCCAAAGTTGGCAAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGAGACAGAAAATATAGAAACAGTTCAAGGCCTAATAGGGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGACCTATTTACTCATCAGATGGAAAATGCATTGGTTTGAAGAAATCACTTGTTTTCTACAAAGGTAGAGCTGCCAAAGGAACCAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCCATTTCAGATTCATCAACCTCTCCTCCCAAAAAATTCTCAGACAAAAGTTTCTCTCCAAATGATTCATGGGCAATTTGTAGGATTTTCAAGAAAACAAATTCTCTTTCCATGGTGCAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAACTTGGTATCTGAATTACTCACACAAACTACAAACATCAATCAATTCTATTCAGAAAATAATATCTCGTGTACAACAACAGAACAAGGATCATCAGCACCAACAAACTTAGAAATCAACAAGCATGAGCTACAACAAGTCACCAACACCAACAACAATTTCCCAGCTCCCAATTTTCCAACATACAAACCTATCAACAACATTAACACAATTTCCAAATCCTCACAAATTCAAGTTCCTAATGGAGACATTATTGATAATCTAATGTTCTACAATCTTGAAGCCAATGGTTCAACAAAGTGCACAATTGATAATGATTGTTCAATTCTTTCAAACACAAACTATATTGGTTTTGAGGACACAAATAATCAATATAATGGATTCTCAATAAGTCTACCTCAAGATATGCAACCAAACATTCAAGATCAAATGGAGCTTAATAATCAATGGGAAAATCTAGGAAGAACAATAGAATTTCCCTTCAATTTGTCTCCAAATTTTGATAGTTTGAGGACTAGTGGTATATGGGACATACCACCTAGTACTAGTGAAATTTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1176 0.3461 MEERTEMDNIKVDDLMPGFRFHPTDEELVAFYLKRKIQQKSLPIELIKQVDIYKFDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSSTSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGNLVSELLTQTTNINQFYSENNISCTTTEQGSSAPTNLEINKHELQQVTNTNNNFPAPNFPTYKPINNINTISKSSQIQVPNGDIIDNLMFYNLEANGSTKCTIDNDCSILSNTNYIGFEDTNNQYNGFSISLPQDMQPNIQDQMELNNQWENLGRTIEFPFNLSPNFDSLRTSGIWDIPPSTSEISTTYVTSKCYT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04759 391 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vivi2g04759 391 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Vivi2g04759 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 244 - -
Vivi2g04759 391 SUPERFAMILY NAC domain 11 174 IPR036093 GO:0003677|GO:0006355
Vivi2g04759 391 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Vivi2g04759 391 FunFam NAC domain-containing protein 35 24 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04759 Vivi-Chr2 165903814 165907312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04759 1 212 NAC Transcription Factor Family AT1G26870 66.822 8.81e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g04759 NAM 9.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04759 - - vvo:131647333 789.26