Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04758 ATGGAAGAAAGAACTGAGATGGATAATATTAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCTACAGATGAAGAACTTGTTGCTTTTTATCTCAAGAGAAAAATTCAACAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTTGATATTTACAAATTTGATCCATGGGATCTTCCAAAAGAGTTGGCAAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGAGACAGAAAATATAGAAACAGTTCAAGGCCTAATAGGGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGACCTATTTACTCATCAGATGGAAAATGCATTGGTTTGAAGAAATCACTTGTTTTCTACAAAGGTAGAGCTGCCAAAGGAACCAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCCATTTCAGATTCATCAACCTCTCCTCCCAAAAAATTCTCAGACAAAAGTTTCTCTCCAAATGATTCATGGGCAATTTGTAGGATTTTCAAGAAAACAAATTCTCTTTCCATGGTGCAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAACTTGGTATCTGAATTACTCACACAAACTACAAACATCAATCAATTCTATTCAGAAAATAATATCTCGTGTACAACAACAGAACAAGGATCATCAGCACCAACAAACTTAGAAATCAACAAGCATGAGCTACAACAAGTCACCAACACCAACAACAATTTCCCAGCTCCCAATTTTCCAACATACAAACCTATCAACAACATTAACACAATTTCCAAATCCTCACAAATTCAAGTTCCTAATGGAGACATTATTGATAATCTAATGTTCTACAATCTTGAAGCCAATGGTTCAACAAAGTGCACAATTGATAATGATTGTTCAATTCTTTCAAACACAAACTATATTGGTTTTGAGGACACAAATAATCAATATAATGGATTCTCAATAAGTCTACCTCAAGATATGCAACCAAACATTCAAGATCAAATGGAGCTTAATAATCAATGGGAAAATCTAGGAAGAACAATAGAATTTCCCTTCAATTTGTCTCCAAATTTTGATAGTTTGAGGACTAGTGGTATATGGGACATACCACCTAGTACTAGTGAAATTTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1179 0.3461 MEERTEMDNIKVDDLMPGFRFHPTDEELVAFYLKRKIQQKSLPIELIKQVDIYKFDPWDLPKELASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSSTSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGNLVSELLTQTTNINQFYSENNISCTTTEQGSSAPTNLEINKHELQQVTNTNNNFPAPNFPTYKPINNINTISKSSQIQVPNGDIIDNLMFYNLEANGSTKCTIDNDCSILSNTNYIGFEDTNNQYNGFSISLPQDMQPNIQDQMELNNQWENLGRTIEFPFNLSPNFDSLRTSGIWDIPPSTSEISTTYVTSKCYT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04758 392 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Vivi2g04758 392 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Vivi2g04758 392 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vivi2g04758 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 245 - -
Vivi2g04758 392 FunFam NAC domain-containing protein 35 24 178 - -
Vivi2g04758 392 SUPERFAMILY NAC domain 11 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04758 Vivi-Chr2 165903814 165907312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04758 1 213 NAC Transcription Factor Family AT1G26870 66.512 4.51e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g04758 NAM 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04758 - - vvo:131647333 795.808