Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04743 ATGTCTAGCAGAAGGTCAAGACAACAATCCTCTTCTTCAAGAATTTCTGATGACCAAATCATCGAACTTGTTTCTAAGTTGCGTCAACTTGTTCCTGAAATTCGTCATAGGCGTTCAGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACATGTAACTACATAAGAAACCTACACAGAGAAGTAGATGATTTGAGTGAAAGATTGTCTCAGTTATTGGTCACAATTGATGCTGATAGTCCAGAGGCTAATATTATCAGAAGCTTAATTAATCAATGA 279 0.3728 MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04743 92 CDD bHLH_AtPRE_like 15 73 - -
Vivi2g04743 92 Gene3D - 2 85 IPR036638 GO:0046983
Vivi2g04743 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Vivi2g04743 92 Coils Coil 55 75 - -
Vivi2g04743 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Vivi2g04743 92 FunFam Transcription factor ILI6 5 87 - -
Vivi2g04743 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Vivi2g04743 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04743 Vivi-Chr2 165601415 165603458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04743 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.000 6.05e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g04743 HLH 7.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04743 - - qsa:O6P43_009068 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04743 2 165601415 165603458 Vivi6g00264 6 6041127 6042934 PCT