Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04741 ATGGCAAGACCATTAGCCAAAATATATGACATCAATGACACCAAAGAACTTTGGAAAGTTTCTGTTCGTGTGCACCACAAATGGACAGTTGTTTCGAACAAGAGGGAGCATTTTGAGATGATTTTTGTTGATGTATCGGGTGGTGACATACATGTTGTTGTTCCTGCACCTCATGTATCTCTATTTTCTAAAAAAATGGTCTTGGATCATAGTTACACCGTTTCCAATTTTAAGGTTCAGGCTAATGTTGCGGCTTTCAGACCTTCGTCTCATAAGTTTATGTTGAAGTTTACTGCTGGCACTACAGTTACGGATGATAACAACGCGGAAATACCTCCAAAGCCGCTGGTGTTTACTAAATTTACTGATATAATAAACGGCAACTTTAACAAGGATGTGCTAATAGATGTCATTGGTATGGTGGAAAGTATTGGGTATTCACAGACCACATCAGGTGCCCGGAAGCAGCAGATTAACATGATGCTGCGTGACGGGGGTGAGAATACTATCAATTGCACGCTTTGGGAATCCTATGCTGAACAATTCATGAAGTTCAAGCAGGAGCGCGGAGATGATTCTGGTCCTATTTTTGTCATGATCCAATATGCTAAAGTCAAGGAACAGGGAAAGTTTCCACTGTCCGTGACAAACACGTTTAATGTTACCGTGCTTGGTCTGAATACTGATTTGCTGCCGATGAAAGAGTTTACAGAAAGCTTTCCGAAGGATTCCATGATTACGTTGTCTGGCCAGGAGGGTTCCAATTCCCAGCTTTCGGCACAGAACTCTGAAAATCAACAGTTGACTCCTGTTCAGAAATTGCTTTCAAAGGCTGTTGTAATGCCTATTGGGGATATCATAAAACTTAGAACTTTGCAGATTACATTTTGTGCGACTGTTGAAGACACTAAAATGCTGGTGGCCTCTCCGTATGGCTGGTATTATCGTGGTTGTCATGCTTGCTCATGTATTGCGCGTGGTGACAGAGCTCCGTTTGAGTGTGAGGCTGGACATTTCACTGAGGCAGAGATTTTTAGGTATAAGATTGAGATTGAAGCTACTCATGCCGGGAATAGCTGTAACTTTCTATTTTGGGACCGAGAGTGTGAGTTACTTTTGGGATTGTCTGCTTCTCAGCTGCGTCATACAATGATTAAGGCTGGCATTAATGATCCCTTGGAATTCCCACTGGCATTGGATCAGATGTTGGATTGCAAGATGGCTTTCAAAGTTAAGTGGAAACCACGGTGGAAGAATGCCTCGGTCGTTATGCTATTGAAGAATGACCCTTTTGTGAAAGAGCTTGCTGATCAGTTTGACACAGATGAAATGAAACAACCCGGTGTTGAAGCAACGACCACTGTTCGATCCGAACCTAATTTTGTCGTCGTAAGGACGTTTACTGATCTTGATGTGAGTTCGACGCACAGCACAGATCCACTTACTCCTACTGGAAAAAGACACTTTCCAGGCGCATCAAGCGAGTCAACAACCTCGGATGCCACATGTGATGGAGAACTTTCATCAAACAAGCTCAAGAAAATTATAAAATAG 1554 0.426 MARPLAKIYDINDTKELWKVSVRVHHKWTVVSNKREHFEMIFVDVSGGDIHVVVPAPHVSLFSKKMVLDHSYTVSNFKVQANVAAFRPSSHKFMLKFTAGTTVTDDNNAEIPPKPLVFTKFTDIINGNFNKDVLIDVIGMVESIGYSQTTSGARKQQINMMLRDGGENTINCTLWESYAEQFMKFKQERGDDSGPIFVMIQYAKVKEQGKFPLSVTNTFNVTVLGLNTDLLPMKEFTESFPKDSMITLSGQEGSNSQLSAQNSENQQLTPVQKLLSKAVVMPIGDIIKLRTLQITFCATVEDTKMLVASPYGWYYRGCHACSCIARGDRAPFECEAGHFTEAEIFRYKIEIEATHAGNSCNFLFWDRECELLLGLSASQLRHTMIKAGINDPLEFPLALDQMLDCKMAFKVKWKPRWKNASVVMLLKNDPFVKELADQFDTDEMKQPGVEATTTVRSEPNFVVVRTFTDLDVSSTHSTDPLTPTGKRHFPGASSESTTSDATCDGELSSNKLKKIIK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04741 517 MobiDBLite consensus disorder prediction 473 505 - -
Vivi2g04741 517 Gene3D - 109 246 IPR012340 -
Vivi2g04741 517 CDD RPA1_DBD_B_like 136 241 - -
Vivi2g04741 517 SUPERFAMILY Nucleic acid-binding proteins 118 244 IPR012340 -
Vivi2g04741 517 Gene3D - 254 430 IPR012340 -
Vivi2g04741 517 Gene3D - 3 105 IPR012340 -
Vivi2g04741 517 SUPERFAMILY Nucleic acid-binding proteins 295 419 IPR012340 -
Vivi2g04741 517 CDD RPA1_DBD_A_like 19 103 - -
Vivi2g04741 517 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi2g04741 517 SUPERFAMILY Nucleic acid-binding proteins 4 104 IPR012340 -
Vivi2g04741 517 MobiDBLite consensus disorder prediction 489 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04741 Vivi-Chr2 165410798 165413220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04741 1 380 Core DNA Replication Machinery Family AT5G08020 20.907 3.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04741 - - vvo:131618652 983.015