Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04729 ATGGATTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCACCATGATCAACTTCATTCATCTTCAACTTCTCTCAACTCTTTCCCTTCCTTTCCACCTCATCAACACTTTCAAGGTGGTGGTAGTAATGGTGGTGCATCTTTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAACAATCACAATCACAATCACAACCACAACCACATCAACAAGTGTGATGAATTGATGCATGGTGATGAAGATCAATTATCAGATGATGAAGGTTACTCACAACTTGGTGAAAAGAAGAAAAGATTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGAAACAAACTTGAACCTGAGAGAAAAATGCAATTAGCAAAAGCTTTGGGATTGCAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGAATCTCTTAAAGCTGATAATGATGCTCTTAAGACTCAAAACCACAAATTACATGCAGAGTTAAAAACTCTAAAGAAAAGGGATTGCTTTGAAAATGGAAAAGCTAGTCTCAAGAAAGAAAATGAAGGTTCATGGAGCAATGGAAGTGATAACAGTTCAGATATGAATCTAGATCTTTCTAGAACACCAATGATGAGCAGTCCTGTTTCTTCACAAAATGGTAAAAGTTTTGTACAAACTTCCCTTAAGCCTTCAAGCATGACACAGCTCCTTCAAGGCTCAACAAGATCTGATCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAACATTGATGAGCAACAGAGTTTATGGCCATGGCCTGATCAGCAGCAGCACCATTTCCATTAA 900 0.3711 MDFPPSHTFIFQTHEDHHHDQLHSSSTSLNSFPSFPPHQHFQGGGSNGGASFMMKRSMSFSGIENNHNHNHNHNHINKCDELMHGDEDQLSDDEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLKADNDALKTQNHKLHAELKTLKKRDCFENGKASLKKENEGSWSNGSDNSSDMNLDLSRTPMMSSPVSSQNGKSFVQTSLKPSSMTQLLQGSTRSDLQDESFCNMFHNIDEQQSLWPWPDQQQHHFH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04729 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 290 IPR045224 GO:0003700
Vivi2g04729 299 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Vivi2g04729 299 MobiDBLite consensus disorder prediction 209 247 - -
Vivi2g04729 299 Pfam Homeodomain 102 155 IPR001356 GO:0003677
Vivi2g04729 299 SMART HOX_1 100 161 IPR001356 GO:0003677
Vivi2g04729 299 FunFam Homeobox-leucine zipper protein ATHB-13 93 161 - -
Vivi2g04729 299 Coils Coil 149 197 - -
Vivi2g04729 299 PRINTS Lambda-repressor HTH signature 128 137 IPR000047 GO:0003677
Vivi2g04729 299 PRINTS Lambda-repressor HTH signature 137 153 IPR000047 GO:0003677
Vivi2g04729 299 CDD homeodomain 102 158 IPR001356 GO:0003677
Vivi2g04729 299 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Vivi2g04729 299 Gene3D - 100 164 - -
Vivi2g04729 299 Pfam Homeobox associated leucine zipper 157 196 IPR003106 GO:0006355|GO:0043565
Vivi2g04729 299 SUPERFAMILY Homeodomain-like 92 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04729 Vivi-Chr2 165181276 165184933 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04729 5 292 Homeobox Transcription Factor Family AT5G15150 50.495 6.08e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g04729 Homeodomain 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04729 K09338 - gmx:100790803 419.083