Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04720 ATGAGCAATGAGAATGGACAGAAACCCCCACCGTCGATACTGGTTGGTCGATTCAAGGCTCTGTTGAAGCAGCGTGAAGATGACCCAAGGCTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTGCAGATTTACGAGGCTTTGTTGGGTGAACTCACGTCGAATGTGAAACCTATCATCACTGATCTTACCATCATTGCTGAACAACATAGGGAACATGCTAGAGGAATCGCTTATGCTATTTGCGCTCGTATTCTCGAGGTGTCTGCAGAACATAAGCTTCCTTCACTCTATCTCTTGGACAGTGTTGTGAAAAATGTTGGCCAGGAATATGTTCGATACTTCTCACTACGTCTACCCGAAGTGTTCTGCGAGGCATACAGACAGGTTAATCCAAGTTTGCATTCTGCGATGCGACATCTCTTTAGTACCTGGTCAAAAGTTTTCCCTCCCTCTGTCTTACGGAAGATTGAAGCACAATTGCAATTTTCTCAAGCTGTTAATAATCAACCATCAAGTGTTAATCCCCTCAGGGCTTCTGAATCTCCTCGGCCAACTCATGGGATACATGTTAACCCAAAATACATAAGACAAATGGAACACTCTACCTCAATTATGGATAGTGTTGTGGGTGAAAGGTTAGGTTCACCAGGAACTGTAGGAAATGCAAATTTTGGCCTTGCAGCTAATAAAGTTCATCAATTGGTGCCAAGTAGGGTTGGCAAATCCTCTTCACCGTCAGGAATTGGACTTGATAGGCACATGCCTTCATATATGGATGAATATGTAGTTGACAATTCTGCTGGCAGGATAGTTGAGAGAGAATCTCCTCATCGTGCTGTTGATTATGGACTAGTTAAAGGATTGAGTAGAGAAGAAGAGTTGCGTGATTGGCCGCGAAAGCAGTTTTCCGGTGATGGTCCGAAGAGATTTCCAACTTCTATGACATACAGTCTTAGTAACGGACAACCACGCCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGTTGGATAGAAATGGCATGGATAAGGTTGTGACGACATCATGGCAGAACACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACACTAGTGGACCATAGTAGAAACAATGGTTTCCTGCAACCAACTATTGGTTTTTCCTCAGAAAAGCCTGTTACTATTCCAGGCAGTGCAACTTCTTCAGTGTCAAGGATATTTCATGGTCTCAAGTCTAATATGGAGTACCGTCCACCAGTTTTGCCGGCAACTTTTGAAATAAGGAACTCTATAAATGTGCATGCTCCTCGTCCTCCCAGCTTAAATCCTACATTTCCATTTAAGAACCCTGTTAGGAATCCATTCGAATCAATAAACGCTAATAGTACCATTGTGAGTCATGGTCTGAATAGACCATTTCCGATCCATGAACAATCGTTGCCCGGTGTTGAGAATAATGACATCAGTAAAAGAAACCCGTATCAGTTACCTAATCAGCTAGCTGGTCTGATTTCATCTAATCCACAAAACCCTGTACAAACACCACAGTTACAGTTTTTTCCATCTCAAGATTCAGCAGCATCGCAATTTAGTTATAGGCCATCTTTGCAAGGACATGGTGCTGCTATAAGTACCCCCATGTCAAATGTCCGACCTGTTATGCCATTCCCTTTGCCTGGCCAAAGAACTGTAAACAACTCTTTTCATTTCCAGGGAGGACCGTTGCGGCCTTTACCTCCAGCCGGTCCACATGCTCCATCCCAGATGCTACCTCATCCCAATCCTAGTCCTTTTGTTTCAAGCCAACAGCCCACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAGGGTGTAATCTCGTTGGCTAATCAAGCCCCTGCACAAGATTTTGTTGGAATTGAGTTTGATCCAGATATTCTGAAGGTCCGTCATGAATCTGCAATCAAAGCCTTATATGGTGATCTTCCTAGGCAATGCACGACTTGTGGCCTCCGTTTTAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCACGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAAAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACAATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCTGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCGGTTCCTGCTGAAGAGGACCAGAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTACAGAGGAGCTGTATACCTTAATGCGCCTAACGGAATAACAGCAGGCATGGACCGGTCGCAGTTAGGCCCTGTTATCCATGCTAAATGCAGATCTGAATCTACTAGCACCCCTACTGAAGAATGTGTGATGGACGAAGGGGGCACATATGAAGAAGGAAATGAAAGAAAACGAATGCGGGTCGTCTGA 2526 0.4414 MSNENGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYEALLGELTSNVKPIITDLTIIAEQHREHARGIAYAICARILEVSAEHKLPSLYLLDSVVKNVGQEYVRYFSLRLPEVFCEAYRQVNPSLHSAMRHLFSTWSKVFPPSVLRKIEAQLQFSQAVNNQPSSVNPLRASESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLGSPGTVGNANFGLAANKVHQLVPSRVGKSSSPSGIGLDRHMPSYMDEYVVDNSAGRIVERESPHRAVDYGLVKGLSREEELRDWPRKQFSGDGPKRFPTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVVTTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQPTIGFSSEKPVTIPGSATSSVSRIFHGLKSNMEYRPPVLPATFEIRNSINVHAPRPPSLNPTFPFKNPVRNPFESINANSTIVSHGLNRPFPIHEQSLPGVENNDISKRNPYQLPNQLAGLISSNPQNPVQTPQLQFFPSQDSAASQFSYRPSLQGHGAAISTPMSNVRPVMPFPLPGQRTVNNSFHFQGGPLRPLPPAGPHAPSQMLPHPNPSPFVSSQQPTVGYSNLINSLMAQGVISLANQAPAQDFVGIEFDPDILKVRHESAIKALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGITAGMDRSQLGPVIHAKCRSESTSTPTEECVMDEGGTYEEGNERKRMRVV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04720 841 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Vivi2g04720 841 SUPERFAMILY ENTH/VHS domain 36 162 IPR008942 -
Vivi2g04720 841 Pfam CID domain 49 156 IPR006569 -
Vivi2g04720 841 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 33 818 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vivi2g04720 841 SMART 558neu5 40 162 IPR006569 -
Vivi2g04720 841 FunFam polyadenylation and cleavage factor homolog 4 34 162 - -
Vivi2g04720 841 ProSitePatterns Zinc finger C2H2 type domain signature. 674 694 IPR013087 -
Vivi2g04720 841 Gene3D - 30 163 IPR008942 -
Vivi2g04720 841 MobiDBLite consensus disorder prediction 297 330 - -
Vivi2g04720 841 CDD CID_Pcf11 45 162 IPR047415 -
Vivi2g04720 841 MobiDBLite consensus disorder prediction 816 841 - -
Vivi2g04720 841 MobiDBLite consensus disorder prediction 309 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04720 Vivi-Chr2 165028669 165034652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04720 14 839 C2H2 Transcription Factor Family AT4G04885 46.100 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g04720 CID 1.4e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04720 K14400 - qsa:O6P43_031220 955.281