Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04712 ATGGGAAAAATAATGGTAGAAAGTTCTACTATGATTGCCTTTATTCTCTTGGTTTTTGTCACCATTACTATTCCATGCACTGAGGCTGGAATTGCTGACTTTGATGATTTTCTTAAAAATCAATCTGATGAAGCCCATAAACTTGTTCTTGATTCTTATGTTCCAATTCCTGAAGAAATTGCAGATGACCTCAATCTTCATGTTAATTTATTAATGGAAGATTCAAACAACACAAGGAGGGAATTGAGGCAAGGTAAAAAAAAATTAGGACCATGTGAAGCAACCAACCCAATTGATAGTTGTTGGAGATGCCAAAAAAATTGGGCTCAAAATAGATTTCAGTTAGCCAAATGTGGCAAAGGGTTTGGAAGAAGAGCCACTGGTGGACTTGGAGGCAGAATTTATGTAGTAACTGATCCTTCAGATAATGATATGGTAAACCCTAAAGTTGGTACCCTAAGACATGCTGTTATCCAAAAGGGTCCATTGTGGATCATTTTCCAACGTAGTATGGTCATTAGATTGAACCAAGAATTGATGGTAACTTCAGACAAAACAATTGATGGTCGCGGTGCTAATGTTCAAGTTAAAGATGGTGCTGGAATTACAATGCAATTTGTTAACAATGTTATCATTCATGGGCTTCGTATGACAAATATTAAATCTAAAAATGGTGGTCTGATTAGAGATTCTGTTGATCATGTTGGAATAAGAACAAGAAGTGATGGTGATGCTATTTCTATTTTTGGTTCTTCTAATATTTGGATTGATCATCTTTCACTCTCTCAATGTGAAGATGGTCTCGTTGATGTTATTCAAGGTTCTACTGGTGTCACCATCTCAAATTGTCACATGACAAAACATAATGATGTTATGTTATTTGGAGCAAGTGATACATACAATGGTGACAAGGTAATGCAAGTAACAGTAGCATTCAACCACTTTGGTCAAGGATTAATTCAAAGAATGCCAAGATGTAGATTTGGTTTTGTCCATGTTTTAAACAATGATTACACACATTGGCAAATGTATGCAATTGGAGGAAGTGCAGGACCAACCATTCTTAGTCAAGGAAATCGTTTCATTGCACCATTCAATACTGCTGCAAAAGAGGTCACACATAGGGATTATGCTGCAAGTGGAGTTTGGAAAAATTGGCAATGGACTTCAGAAATGGATGTGTTCATGAATGGTGCTACATTTACACCATCTGGATCACCAATCAACAAAGCTCCATTCAAGAAAGGCTTTATGATGAAACCAAGACATGGATCTCATGCTAGTAGACTAACAAGGTATTCTGGTGCCCTAAATTGTGTGGTAGGAAGGCCTTGTTAG 1338 0.3692 MGKIMVESSTMIAFILLVFVTITIPCTEAGIADFDDFLKNQSDEAHKLVLDSYVPIPEEIADDLNLHVNLLMEDSNNTRRELRQGKKKLGPCEATNPIDSCWRCQKNWAQNRFQLAKCGKGFGRRATGGLGGRIYVVTDPSDNDMVNPKVGTLRHAVIQKGPLWIIFQRSMVIRLNQELMVTSDKTIDGRGANVQVKDGAGITMQFVNNVIIHGLRMTNIKSKNGGLIRDSVDHVGIRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDVIQGSTGVTISNCHMTKHNDVMLFGASDTYNGDKVMQVTVAFNHFGQGLIQRMPRCRFGFVHVLNNDYTHWQMYAIGGSAGPTILSQGNRFIAPFNTAAKEVTHRDYAASGVWKNWQWTSEMDVFMNGATFTPSGSPINKAPFKKGFMMKPRHGSHASRLTRYSGALNCVVGRPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04712 445 SMART amb_all 170 367 IPR002022 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Vivi2g04712 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Vivi2g04712 445 PANTHER PECTATE LYASE 18-RELATED 49 443 IPR045032 GO:0030570
Vivi2g04712 445 Pfam Pectate lyase, N terminus 31 82 IPR007524 GO:0030570
Vivi2g04712 445 Gene3D - 95 438 IPR012334 -
Vivi2g04712 445 Pfam Pectate lyase 178 361 IPR002022 -
Vivi2g04712 445 SUPERFAMILY Pectin lyase-like 86 439 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04712 Vivi-Chr2 164634664 164637364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04712 11 445 Polysaccharide Lyase AT5G15110 55.106 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04712 K01728 - gmx:100785801 698.353