LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g04712	ATGGGAAAAATAATGGTAGAAAGTTCTACTATGATTGCCTTTATTCTCTTGGTTTTTGTCACCATTACTATTCCATGCACTGAGGCTGGAATTGCTGACTTTGATGATTTTCTTAAAAATCAATCTGATGAAGCCCATAAACTTGTTCTTGATTCTTATGTTCCAATTCCTGAAGAAATTGCAGATGACCTCAATCTTCATGTTAATTTATTAATGGAAGATTCAAACAACACAAGGAGGGAATTGAGGCAAGGTAAAAAAAAATTAGGACCATGTGAAGCAACCAACCCAATTGATAGTTGTTGGAGATGCCAAAAAAATTGGGCTCAAAATAGATTTCAGTTAGCCAAATGTGGCAAAGGGTTTGGAAGAAGAGCCACTGGTGGACTTGGAGGCAGAATTTATGTAGTAACTGATCCTTCAGATAATGATATGGTAAACCCTAAAGTTGGTACCCTAAGACATGCTGTTATCCAAAAGGGTCCATTGTGGATCATTTTCCAACGTAGTATGGTCATTAGATTGAACCAAGAATTGATGGTAACTTCAGACAAAACAATTGATGGTCGCGGTGCTAATGTTCAAGTTAAAGATGGTGCTGGAATTACAATGCAATTTGTTAACAATGTTATCATTCATGGGCTTCGTATGACAAATATTAAATCTAAAAATGGTGGTCTGATTAGAGATTCTGTTGATCATGTTGGAATAAGAACAAGAAGTGATGGTGATGCTATTTCTATTTTTGGTTCTTCTAATATTTGGATTGATCATCTTTCACTCTCTCAATGTGAAGATGGTCTCGTTGATGTTATTCAAGGTTCTACTGGTGTCACCATCTCAAATTGTCACATGACAAAACATAATGATGTTATGTTATTTGGAGCAAGTGATACATACAATGGTGACAAGGTAATGCAAGTAACAGTAGCATTCAACCACTTTGGTCAAGGATTAATTCAAAGAATGCCAAGATGTAGATTTGGTTTTGTCCATGTTTTAAACAATGATTACACACATTGGCAAATGTATGCAATTGGAGGAAGTGCAGGACCAACCATTCTTAGTCAAGGAAATCGTTTCATTGCACCATTCAATACTGCTGCAAAAGAGGTCACACATAGGGATTATGCTGCAAGTGGAGTTTGGAAAAATTGGCAATGGACTTCAGAAATGGATGTGTTCATGAATGGTGCTACATTTACACCATCTGGATCACCAATCAACAAAGCTCCATTCAAGAAAGGCTTTATGATGAAACCAAGACATGGATCTCATGCTAGTAGACTAACAAGGTATTCTGGTGCCCTAAATTGTGTGGTAGGAAGGCCTTGTTAG	1338	0.3692	MGKIMVESSTMIAFILLVFVTITIPCTEAGIADFDDFLKNQSDEAHKLVLDSYVPIPEEIADDLNLHVNLLMEDSNNTRRELRQGKKKLGPCEATNPIDSCWRCQKNWAQNRFQLAKCGKGFGRRATGGLGGRIYVVTDPSDNDMVNPKVGTLRHAVIQKGPLWIIFQRSMVIRLNQELMVTSDKTIDGRGANVQVKDGAGITMQFVNNVIIHGLRMTNIKSKNGGLIRDSVDHVGIRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDVIQGSTGVTISNCHMTKHNDVMLFGASDTYNGDKVMQVTVAFNHFGQGLIQRMPRCRFGFVHVLNNDYTHWQMYAIGGSAGPTILSQGNRFIAPFNTAAKEVTHRDYAASGVWKNWQWTSEMDVFMNGATFTPSGSPINKAPFKKGFMMKPRHGSHASRLTRYSGALNCVVGRPC	445

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g04712	445	SMART	amb_all	170	367	IPR002022	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	386	410	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	142	167	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	178	194	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	344	363	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	118	135	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	242	263	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	416	439	IPR018082	-
	Vivi2g04712	445	PRINTS	Pollen allergen Amb family signature	322	341	IPR018082	-
	Vivi2g04712	445	PANTHER	PECTATE LYASE 18-RELATED	49	443	IPR045032	GO:0030570

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g04712	Vivi-Chr2	164634664	164637364	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g04712	11	445	Polysaccharide Lyase	AT5G15110	55.106	0.0	528

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g04712	K01728		-	gmx:100785801	698.353

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