Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04684 ATGGATACTATCAAATCAAACAAGGCTTGTGCAGCTTGCGAATATCAATGGAGAAAGTGTTTAAGAGAGTGTTTCGCTCCAAATTTTCCGGCCGATAAACCAATAATGTTTCACAGTGCTCATTGTTTGTATGGCGTTTCTACGATAGCGAGAATTCTAAATGATGTTGCTAATGTTCGTTATAATTTTTACAATAATGAAAATAATATTGAAATTATGATGAATGCGTCTCCTTTAGATAACATTCCCCGTGATATTAACAATACTCCGACTAATACAAATTTGAATATAAATTCAATGGATGCAATAAGGGTTGCACAATTGAGTGAAGGACTACTCTCCAATACACATGTTAGTGCAAACGATGATTTGAAGGAAGAGGAAGAAGAATTTGATGTTAATAATTTCTTCATTCCAGATTCTGAAATTGATAGGATTTATAATGGTGATGAACAATCCTTTGTAGAAAAAGATGCAATATCTGTAACAAATGAATATGTCATTGATGCCTTCAACAAGAGAAATAGATTTTTCTAG 537 0.3259 MDTIKSNKACAACEYQWRKCLRECFAPNFPADKPIMFHSAHCLYGVSTIARILNDVANVRYNFYNNENNIEIMMNASPLDNIPRDINNTPTNTNLNINSMDAIRVAQLSEGLLSNTHVSANDDLKEEEEEFDVNNFFIPDSEIDRIYNGDEQSFVEKDAISVTNEYVIDAFNKRNRFF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04684 178 ProSiteProfiles LOB domain profile. 8 112 IPR004883 -
Vivi2g04684 178 Pfam Lateral organ boundaries (LOB) domain 9 58 IPR004883 -
Vivi2g04684 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04684 Vivi-Chr2 164003706 164004242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04684 6 56 AS2 family AT3G47870 46.154 1.40e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04684 LOB 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04684 - - vvo:131650506 329.717