Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04679 ATGAATACCATCAAATCAAACAAGGCTTGTGCAGCCTGCACACATCAAAGGAGAAAGTGTTCAAAAGATTGTCTTTTAGCTCCTTATTTTCCTGCCAATAAACCAAAAATGTTTCACAATGCTCATAGTTTGTATGGTGTTTCTAATATGGTGAGAATTCTAAATGAAGTTCCAAAGGAGAAGAGAGATTTAGCAATGAGAACCGTTATTTATGAGTCAAATGTTCGCAAGATATATCCAATTGGCGGATGTGTTGATGTTATTAAGGAATATTCTGATAAGATAAGCGAGGCTCTTGAAGAGTTAAATCAAGTAAAAAAAGTTTTAGATTATTGTAAAGTAAATCATTTGCCATCACAAAAGCTTTCCTCTTCGCTACCTTCTACAAGTTTTCAAAATCCAAATCTTCAACCACATTTTCCGATAGATCATTCTTTGAGAGATTCTATTAGTTCTCATAATCCAAATCTCCAACCGTATTTTTCAATGGATCATTCTCCGAGAGCTTCTACTAATTCTGATATTTCAAATATTCCAATATTTAACAATGTTGGGAATGTTACTAATTATTATCACAATAGTGAAAATAATATAGAAACCATGACGAATGCATCTCCTTCAGATATCATTCATCGTGAGGTTAACAATGCTCCGACTAATACAAATTTGAATATAAATTCAATGGATGCAATAAGGGTTGCACAATTGAATTCTGATATTGATAGGTTTGATTTCAGTGATGGACAATTCTTTGTAGAATATGATTCATCTCAAAGGAATTAG 783 0.3244 MNTIKSNKACAACTHQRRKCSKDCLLAPYFPANKPKMFHNAHSLYGVSNMVRILNEVPKEKRDLAMRTVIYESNVRKIYPIGGCVDVIKEYSDKISEALEELNQVKKVLDYCKVNHLPSQKLSSSLPSTSFQNPNLQPHFPIDHSLRDSISSHNPNLQPYFSMDHSPRASTNSDISNIPIFNNVGNVTNYYHNSENNIETMTNASPSDIIHREVNNAPTNTNLNINSMDAIRVAQLNSDIDRFDFSDGQFFVEYDSSQRN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04679 260 Coils Coil 88 108 - -
Vivi2g04679 260 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Vivi2g04679 260 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Vivi2g04679 260 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04679 Vivi-Chr2 163800290 163801180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04679 6 113 AS2 family AT1G72980 43.519 6.85e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04679 LOB 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04679 - - vvo:131650505 324.709