Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04678 ATGGATATTTCCAAGAAACGTGCATGTTGCGCATGCCATCATCGAAGACGTAAGTGTTCTCCAGATTGCCCTTTCGCTCCTTATTTTCCGGCCGATGAACCAAAAATGTTCGCCAATGCTCATCGCTTGTTCGGCATTTCCGGAATGTTGAAGACTCTAAAGAAGATTAGTGATGATGAAGGAAAAGATGCAGCAATGAAGTCAATAATTTTTGAGTCGGATGTTCGTGCAAATTTCCCAGTTCATGGATGTCTCGGTGTTATTATCGTGTATCAAAGTATGATCCAGAAGCACGCGGAAGAGTTGGATCGAGTAAAAAAGGTACTAAGTTTGTTTCAACAACACAATCTTGTACCTGATTTTTCAGTGGATCATTCTTTGATACCTTCTACTAGTTCTCAAATTCCAAGTTTTAACAATGTTGGTGAACAATATTCAAGTTCTTATGTTAATGATATCATCCCTCATGATGTTAACAATAGTCAAGTTCTTGAACATCTTAGGGTTATTATGGAGTATCAAGATATGATAAAGAAGTGTGAGGAAGAGTTAGATTATGTCAAAAAGTTAATTACTTTTTGTAGGCAAAGTTACCCTTCACAGCAACAAAATATTCCACCTAACCCTAATGGTGGTGTTGATGCTCAAGGATCATTTTAA 660 0.3727 MDISKKRACCACHHRRRKCSPDCPFAPYFPADEPKMFANAHRLFGISGMLKTLKKISDDEGKDAAMKSIIFESDVRANFPVHGCLGVIIVYQSMIQKHAEELDRVKKVLSLFQQHNLVPDFSVDHSLIPSTSSQIPSFNNVGEQYSSSYVNDIIPHDVNNSQVLEHLRVIMEYQDMIKKCEEELDYVKKLITFCRQSYPSQQQNIPPNPNGGVDAQGSF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04678 219 Coils Coil 170 190 - -
Vivi2g04678 219 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Vivi2g04678 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 147 - -
Vivi2g04678 219 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04678 Vivi-Chr2 163774813 163775472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04678 8 113 AS2 family AT3G47870 53.774 7.40e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04678 LOB 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04678 - - vvo:131650499 424.476