Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04672 ATGTTCGCCAATGCTCATCGCTTGTTCGGCATTTCCGGAATGTTGAAGACTCTAAAGAAGATTAGTGATGATGAAGGAAAAGATGCAGCAATGAAGTCAATAATTTTTGAGTCGGATGTTCGTGCAAATTTCCCGGTTCATGGATGTCTCGGTGTTATTATCGTGTATCAAAGTATGATCCAGAAGCACACGGAAGAGTTGGATCGAGTAAAAAAGGTACTAAGTTTGTTTCAACAACACAATCTTGTACCTGATTTTTCAGTGGATCATTCTTTGATACCTTCTACTAGTTCTCAAATTCCAAGTTTTAACAATGTTGGTGAATAA 327 0.3761 MFANAHRLFGISGMLKTLKKISDDEGKDAAMKSIIFESDVRANFPVHGCLGVIIVYQSMIQKHTEELDRVKKVLSLFQQHNLVPDFSVDHSLIPSTSSQIPSFNNVGE 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04672 108 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 80 - -
Vivi2g04672 108 ProSiteProfiles LOB domain profile. 1 74 IPR004883 -
Vivi2g04672 108 Pfam Lateral organ boundaries (LOB) domain 2 71 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04672 Vivi-Chr2 163690492 163690818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04672 1 78 AS2 family AT3G47870 50.000 3.04e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04672 LOB 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04672 - - vvo:131650497 216.468