Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04647 ATGGATATTTCCAAGAAACGTGCATGTTGCGCATGCCATCATCGAAGACGTAAGTGTTCTCCAGATTGCCCTTTCGCTCCTTATTTTCCGGCAGATGAACCAAAAATGTTCGCCAATGCTCATCGCTTGTTCGGCATTTCCGGAATGTTGAAGACTCTAAAGAAGATTAGTGATGATGAAGGAAAAGATGCAGCAATGAAGTCAATGATTTTTGAGTCGGATGTTCGTGCAAATTTCCCGGTTCATGGATGTCTCGGTGTTATAATCGTGTATCAAAGTATGATCCAGAAGCACGCGGAAGAGTTGGATCGAGTAAAAAAGGTACTAAGTTTGTTTCAACAACACAATCTTGTACCTGATTTTTCAGTGGATCATTCTTTGATACCTTCTACTAGTTCTCAAATTCCAAGTTTTCCCGTATTTAACAATGTTGGTGAATAA 441 0.3991 MDISKKRACCACHHRRRKCSPDCPFAPYFPADEPKMFANAHRLFGISGMLKTLKKISDDEGKDAAMKSMIFESDVRANFPVHGCLGVIIVYQSMIQKHAEELDRVKKVLSLFQQHNLVPDFSVDHSLIPSTSSQIPSFPVFNNVGE 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04647 146 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Vivi2g04647 146 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Vivi2g04647 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04647 Vivi-Chr2 163334267 163334707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04647 8 113 AS2 family AT3G47870 52.830 2.90e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04647 LOB 4.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04647 - - vvo:131650499 278.1