Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04632 ATGGGAAGGCCTCCTTGTTGTGATAAAACCAATGTGAAAAGGGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTTGCTAATCATGGAATCGGAAATTGGACATTGGTTCCAAAGATAGCCGGATTGAATAGATGTGGTAAGAGTTGTAGACTAAGATGGACTAATTATCTAAGACCTGATTTGAAGCATGATAGTTTTACACCTCAAGAAGAAGAACTGATTATTACTCTTCATGCAGCTATAGGAAGCAGATGGTCCTTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTGAAGAATTATTGGAACACAAAACTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTTCTCTCTGATTTAGGAAGCATTAGTACCCTCACAACAATAACCACTCAAAACCAAATGAATTTTGCCAATAACAACTCAATTTTGGAGCATCCAAAAGAGGAGCAAGTTCAATATCACCACCAATTCACAAACCAAGAGAGTTTCCAACAACAATATGTTTTAAATGAAGTTGCATCTTCAACTTCTTCATCATGTTCCTCTAATTTAACAAGGCTAAGTTCGCCGATTTCGTATTCGTGCAAAACCTCACAAGCTCAAGTTAATCCTAACTTTGATTGGAGCGAGTTTCTTCACAATGACGAGCCTTTTATGTGGTCGGAGATTCAACAGATTCAACAATGTGACATACAAAGGGTAATGTCGTCGTTGAGCCTCGGTTTATTGCAAAATGAAGGTGAAGTTTCTAATAGTAATAATAACTATAATAGTAATGGAAATGATAAACAAGGTGGTTCAAGTGAAGGTTTTGATGCGGTTGCTTGTGTTGCAAGTAAGGAATATGAAATGAATAAGCAATGTGAAGGACATTCATTTTCGGGGAATGAGTTTGTGGATGGTATTTTGGATAAGGATAGTGAGATAAGGGCAACATTTCCTGAGTTTTTAGATGCTTCTTTTGATTATTGA 1023 0.3666 MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIITLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISTLTTITTQNQMNFANNNSILEHPKEEQVQYHHQFTNQESFQQQYVLNEVASSTSSSCSSNLTRLSSPISYSCKTSQAQVNPNFDWSEFLHNDEPFMWSEIQQIQQCDIQRVMSSLSLGLLQNEGEVSNSNNNYNSNGNDKQGGSSEGFDAVACVASKEYEMNKQCEGHSFSGNEFVDGILDKDSEIRATFPEFLDASFDY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04632 340 PANTHER F14D16.11-RELATED 1 340 - -
Vivi2g04632 340 CDD SANT 69 112 IPR001005 -
Vivi2g04632 340 Gene3D - 7 67 - -
Vivi2g04632 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi2g04632 340 Gene3D - 68 131 - -
Vivi2g04632 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g04632 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vivi2g04632 340 CDD SANT 17 61 IPR001005 -
Vivi2g04632 340 FunFam Transcription factor RAX3 7 67 - -
Vivi2g04632 340 FunFam transcription factor MYB80 69 129 - -
Vivi2g04632 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g04632 340 SMART sant 66 114 IPR001005 -
Vivi2g04632 340 SMART sant 13 63 IPR001005 -
Vivi2g04632 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g04632 340 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Vivi2g04632 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04632 Vivi-Chr2 163008703 163010822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04632 1 340 MYB Transcription Factor Family AT3G28470 45.983 7.92e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g04632 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04632 K09422 - gmx:100815077 414.846