Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04612 ATGAAAAGATCAAGCTCAGTGTCTAGTGATGAAGACAACTCTGAGTTGAAGATCAATAAAATTTCCGTTGAAGATTTAAAGCACAAGTGCAATATTTGTGGCAAAGCATATAACAACGGAAAAGCTTTGGGTGGTCACCGAAGATCTCACTTTCTTAAGAAGAAAGCTAATCATCATTCACAAAAGGTGAAAACTCCTCTCTCAATTCAAGTTAGTAATAATAGAGCTAATCGTTTCAATGATAATGATAAGCATGATGAAGAAGAAATTGATGAGAAAAAGAAACTAAGTTGTTATATTTGCAAGAAGGAATTTTCGACAAACAATGCTTTGTACGGTCATATGAGATCTCACCCCGATAGGGTTGTTAAAGGAGTTAGTCCTCCTTCTTCCAACAATTCTAATTCGTCTATTCGACAAAACAAAGAAGATGAAGATGATCAAGGCGATGATAATTGTTCTTTGCCTAGATGGCAAAAGAGAGATAAGAGAGGCCGAAAATGTATTGGTAGTGCTGAGGCTGCTGACAATCTTTTGTATCTTCGATCCGATAAATATCTGTCTATTTTGTCGACCGATGAGTTGGTTCCTCATCATAAAAGAGATTTTCACATATCTAGTGATGAGTCAAAAACTCATAAACTCTCTGATCTTCATCATAAAGAAGATATTCATATGTCTAGCAATGAGTCACAAACTCCTGAATTATCCGTTGCTCATCATAAGGGAGAATTTCATAAGGGTGAGTCATCTTCAAATGAGATTCAGAAGAAAAAGCTTGGGATGAAAAAGATTAAAATCTTTATAGGATCTTCATCGAAGATTCGAAACAAAAATAATAAGAATGATGATGAGGGCGATGATGAGAAGTTAAAGAAAGACAAAAGCCTGTCTCAGTCTCATGTTAAAGAGGAAGAAATGAACCATAATGATGAACAAAAGATATTGGATTTTGATTTGAATGAGCCTTATGTTATGGAGGATCAAGAAAATTGTTAA 999 0.3473 MKRSSSVSSDEDNSELKINKISVEDLKHKCNICGKAYNNGKALGGHRRSHFLKKKANHHSQKVKTPLSIQVSNNRANRFNDNDKHDEEEIDEKKKLSCYICKKEFSTNNALYGHMRSHPDRVVKGVSPPSSNNSNSSIRQNKEDEDDQGDDNCSLPRWQKRDKRGRKCIGSAEAADNLLYLRSDKYLSILSTDELVPHHKRDFHISSDESKTHKLSDLHHKEDIHMSSNESQTPELSVAHHKGEFHKGESSSNEIQKKKLGMKKIKIFIGSSSKIRNKNNKNDDEGDDEKLKKDKSLSQSHVKEEEMNHNDEQKILDFDLNEPYVMEDQENC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04612 332 MobiDBLite consensus disorder prediction 271 332 - -
Vivi2g04612 332 MobiDBLite consensus disorder prediction 119 158 - -
Vivi2g04612 332 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 328 IPR044653 GO:0003700
Vivi2g04612 332 MobiDBLite consensus disorder prediction 277 318 - -
Vivi2g04612 332 Gene3D Classic Zinc Finger 25 118 - -
Vivi2g04612 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Vivi2g04612 332 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vivi2g04612 332 Pfam C2H2-type zinc finger 28 50 - -
Vivi2g04612 332 Pfam C2H2-type zinc finger 98 120 - -
Vivi2g04612 332 SUPERFAMILY beta-beta-alpha zinc fingers 28 118 IPR036236 -
Vivi2g04612 332 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Vivi2g04612 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Vivi2g04612 332 MobiDBLite consensus disorder prediction 139 158 - -
Vivi2g04612 332 SMART c2h2final6 28 50 IPR013087 -
Vivi2g04612 332 SMART c2h2final6 96 118 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04612 27 132 C2H2 Transcription Factor Family AT2G26940 36.937 1.63e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g04612 zf-C2H2_6 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04612 - - vvo:131627027 556.599