Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04611 ATGAAGAGGACAAGAGATGATATTTACTCTGCTTCTCAATTCAAACGCCCTTATGGGTCTTCACGTGGTGATTCCTATGGCCAAGGCCAAGGTCAAGTCCCTGGAAGTGGAGGTGGTGGTGGAGGTGGACTTGTTATCGGCGGTGGAGGAGCAACTACTTCCCAGAAATTGACTACAAATGATGCTTTATCATATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAAAGAAAAATATGACACCTTTCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACCGACACTTCTGGTGTCATAGCAAGGGTCAAGGAACTATTCAAAGGTCACAACAATTTGATATTTGGATTTAACACTTTCCTGCCCAAGGGATATGAGATAACTCTTGATGAAGATGAAGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGACGAGCATGTTTACAAATCATTCTTGGATATTTTGAATATGTATCGCAAAGAACACAAGGACATTGGTGATGTTTACAGTGAGGTTGCTATCCTTTTTAAGGACCATAGAGACTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCATTGCAACGCTTCAATGAGCGGGGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGACAAGCATCGATATCGGCGAGACCGATTTCCTTCTCATGATCGTGATCTGAGTGTTGAACGTCCTGATCTGGATGACGACAAAACAATGATGAACTTGCATAAGGAGCAAAGGAAACGTGAGAGTAGGGATAGAAGGATCCGCGATCATGATGAAAGAGAACATGATCTTGATAACTCACAACGCTTTCTGGACAAAAAGAAATCTGTTAAGAAAGCTGAAGCTTATGGATTGTCTTCTGATTATGCTTCTCATGATGATAAACATGCATTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTGCTGAGGACTACCAAACATTCTTGAAATTGCTTCATATTTTTAGCAATGGAATAATAAAAAGGAATGATTTACAAAATTTGGTGACTGATTTACTTGGAAAGTATTCTGATCTCATGAGTGAATTCAATGATTTCTTGGAGCGGTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTCGCTACTGATGGTCATTTATCAAGATCAGCCAAGTTGGAGGACAAAGAACTCAAGCGTGAGATGGAAGGAGCTAAAGAGAAGGAAAGATACAAGGAGAAATATATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTTCTCCCAGCTACCGACTTCTACCTGCTGATTATCCGATTCCTATGGCTAGTCAGCGATCTGATCTTGGTGCACAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGATGAGTTGTACACCAACATTACTGAAAATAAGATCAGCGTGGAGAGTCTGAGTCGTATTGAAGATCACTTTACTGTTCTGAATTTAAGATGCATTGAACGCCTATATGGTGACCATGGCCTTGATGTCCTAGACATACTCCGGAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAACAGGTGCCGTACCGATTTCAATAAAGTTTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCACCGTAGTTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGTACCAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAAGATGACATTGTCCAGTCTATTGCTGCTGGGGCTAAATATTCTCTCCTTCCACATTTGGAATTCGACTTTTCTGATGCCGAAATTCATGAGGACTTGTATAAACTTGTTCGATATTCGTGTGAGGAGGTATTCTCAAGTAAAGAGTTATTTAACAAAATTATGAGGCTCTGGAGTTCCTTCTTGGAACCGATGCTCGGTGTTACTTCCCTATCACATGAGACCGAAAAGGTAGAGGACAAGAAAGTAGGACATAGCGCCCAAAGTTCTGTTGCACCGAATGCAGGAGGTGACGGAAGCCCTCACAGAGAATCAATTTCAAGGTTACCAAAATCTGAGAAGAATGAAGGTGATGGTAGATTAACTGAAGGGAAAAATGTTCACCAAACTAGTTTAGCTGCCCATGATAAAGAAAGTGGTTCTGTTGGTAGCGAACTTGTTACTAGAGATGATCTTTTAATGGATAAAGGGCAGAAAAGTGTTGAGTGCAATGATAATAAAGCCCCTGGATTTGGTAAACAGTTTTCCTCTGATGAACCAGGAGCGAGAAACACCACATCTGTTGCAATTAGAGGCGAAAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGCCGAATACTTACTCCATCCCGACCTACTGTTGCTGATGTCTCTGGAGCTAAAGCCAAGTCTCCGAGTGCTAATCTACCTTTGGTAGAGGGATGTGATGCTATCGCTCGATCTCCAATACCAGTGGCCAATGGCATGTTAGTTGAGAACAATAAAGTTAAAAGCTATGAAGAATCTTCTGTGCCTTGCAAAATTGAAAAAGAAGAGGGTGAATTATCCCCTAATGCTGACTCTGAAGAGGATAATTTTGTTGCCTATGATTCAAACCTGCAGTCAATTGAAAAGTCAAAGAACAATGATGATATTAGGAAATATGATGCAGAGGCTGGAGGTGATAATGATGCAGATGCTGATGATGAAGATAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCGGGAAGTGAGTCTCCTGGGGATGAATGTTTCCGGGGAGATCATGAGGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAAGCTGAGAGTGAAGGTGAAGCCGAGGGGCTGTGTGATGCACAAAATGGTGGAGATGGCTCATCTTTATCGTTAACAGAGAGGTTCCTTTCAACTGTGAAACCTCTCACAAAGCATGTATCAGCCGTTTCATTCGTTGAAGATGTAAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTACGAAAGGATCTTATCCGCAAAAGAAAATTCAACTAGTGCCGAAATGAAACGGAAAGGAAAAGATGCTAGTTCTACGGATCCTTATACAAGATTTATGGACGCATTATATAATTTGCTCGATGGATCTGTTGAGAATGCTAAATTTGAAGATGAATGTCGAGCAATTCTTGGAAACCAGTCTTATGTGTTATTCACATTGGATAAGTTAATCTATAAACTTATCAGACAGCTTCAAACTGTTGCAACCGATGAGGAAGACAATAAGCTTCTCCAATTATACGAGTACGAAAAGTCTCGGAAACCTGGCAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAAAACATTTATCGTTTTCAATGTTCGTCTAGCCCCTCTCGGCTCTCCATACAACTCATGGACAATATGAATGAAAAGCCCGAGATTGCCGCCGTTTCGGTTGATCCAAATTTTTCTTTTTATCTGCATAATGATTTTCTGTCGGTTCTTCCTAGCAAAAAGGAGCCTCATGGCATTTTACTAGAAAGAAACAAATCGAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGCGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATGTCTTGCAACTCATCCAAGATTTCTTATGTTCTCGACACGCAAGATTTTTTCTTTCGACCAAGAAGGAAAAGGCGAACCTCGTCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAGAGAAAGAGAGGAAAGATTTCGCAAATTTATGGCATCCGCCATCTAA 4134 0.4047 MKRTRDDIYSASQFKRPYGSSRGDSYGQGQGQVPGSGGGGGGGLVIGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDTFLEVMKDFKAQKTDTSGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGDVYSEVAILFKDHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERGSMAPMMRQMQVDKHRYRRDRFPSHDRDLSVERPDLDDDKTMMNLHKEQRKRESRDRRIRDHDEREHDLDNSQRFLDKKKSVKKAEAYGLSSDYASHDDKHALKSMYSQAFSFCEKVKEKLSSAEDYQTFLKLLHIFSNGIIKRNDLQNLVTDLLGKYSDLMSEFNDFLERCENIDGFLAGVMSKKPLATDGHLSRSAKLEDKELKREMEGAKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPMASQRSDLGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYTNITENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRTDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIVQSIAAGAKYSLLPHLEFDFSDAEIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSSFLEPMLGVTSLSHETEKVEDKKVGHSAQSSVAPNAGGDGSPHRESISRLPKSEKNEGDGRLTEGKNVHQTSLAAHDKESGSVGSELVTRDDLLMDKGQKSVECNDNKAPGFGKQFSSDEPGARNTTSVAIRGESSVNRTNLDMSPGRILTPSRPTVADVSGAKAKSPSANLPLVEGCDAIARSPIPVANGMLVENNKVKSYEESSVPCKIEKEEGELSPNADSEEDNFVAYDSNLQSIEKSKNNDDIRKYDAEAGGDNDADADDEDSENVSEAGEDVSGSESPGDECFRGDHEEEEDMEHDDVDGKAESEGEAEGLCDAQNGGDGSSLSLTERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTSAEMKRKGKDASSTDPYTRFMDALYNLLDGSVENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQCSSSPSRLSIQLMDNMNEKPEIAAVSVDPNFSFYLHNDFLSVLPSKKEPHGILLERNKSKYGDLDELSAICAVMEDVKVVNGLECKMSCNSSKISYVLDTQDFFFRPRRKRRTSSSSSSTSSSRSRREREERFRKFMASAI 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04611 1377 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Vivi2g04611 1377 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Vivi2g04611 1377 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Vivi2g04611 1377 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Vivi2g04611 1377 SMART hdac_interact2seq4b 465 565 IPR013194 -
Vivi2g04611 1377 FunFam Paired amphipathic helix protein SIN3 331 405 - -
Vivi2g04611 1377 PANTHER SIN3B-RELATED 55 1235 IPR039774 GO:0003714
Vivi2g04611 1377 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
Vivi2g04611 1377 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Vivi2g04611 1377 Coils Coil 426 446 - -
Vivi2g04611 1377 Pfam Sin3 family co-repressor 467 559 IPR013194 -
Vivi2g04611 1377 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 990 1005 - -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 14 32 - -
Vivi2g04611 1377 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Vivi2g04611 1377 FunFam Paired amphipathic helix protein Sin3 61 123 - -
Vivi2g04611 1377 FunFam Paired amphipathic helix SIN3-like protein 138 209 - -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 242 307 - -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 1 42 - -
Vivi2g04611 1377 Gene3D Paired amphipathic helix 332 405 IPR036600 GO:0006355
Vivi2g04611 1377 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 932 1058 - -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 777 796 - -
Vivi2g04611 1377 Pfam C-terminal domain of Sin3a protein 1093 1340 IPR031693 -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 1345 1368 - -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 851 879 - -
Vivi2g04611 1377 Gene3D Paired amphipathic helix 138 210 IPR036600 GO:0006355
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 834 903 - -
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 750 817 - -
Vivi2g04611 1377 SUPERFAMILY PAH2 domain 337 403 IPR036600 GO:0006355
Vivi2g04611 1377 MobiDBLite consensus disorder prediction 972 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04611 Vivi-Chr2 162432541 162440975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04611 44 158 WRKY Transcription Factor Family AT4G12020 52.586 5.44e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g04611 Sin3a_C 3.8e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04611 K11644 - gmx:100807181 2118.2