Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04603 ATGGGTGGTGAGGATCAGAAAAATGTTTCCTTTGTTAAAACAAAGAAAACCAATAATGCTTCTTTTAGGTCAATTTTCATGCATGCTGATATTCTAGATTGGTTCTTCATGGTTTTTGGTTCTTTGGGGGCAATTAGTGATGGCACAATGGTACCTGTGGTGGTGTTTATCACAGGCCAAATCATGAACTCTATGGGTGGTTTTTCTGGCTCATCAATCAACAACTTTGTTCATAGCATCAATGAGAATGCAGTTATTGTGTTATACGTGGCTTGTGTCTCTTTTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGCTGAAAGACAAGCTACAAGAATGAGAGCTAGGTACATGAAAGCAGTTTTAAGACAAGAAGTTGCATACTTTGATTTGCATGTTACAAGTACATCAGATGTCATCACTAATGTCTCTGCAGACAGCCTAGTAATTCAAGAAGTTCTAAGTGACAAGGTTCCAGATTTTTTGAAGAATATATCTCGATTCATTGGGAGCTATATAGTGGCATTTATATCATTATGGAGATTGGCCATTGTTGGATTCCCTTTTGTAGTTCTACTTGTGGTTCCTGGTTTCATGTATAAGAGGACTTTGATGGGGTTGGCTAGAAAAATCAGACAAGAGTATAACCAAGCTGGTACAATAGTAGAACAAACAATATCTTCTATCAGAACTGTTTATTCTTTTGTGGGAGAAACCAAAACCATAGCTGCTTTCTCTGATGCTTTAGAAGGATCTGTGAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGCTTAGTCATTGGAATCAATGGTCTTAGTTTTGCTATATGGGCTTTAATTGTCTATTATGGTAGCATATTGGTCATGTATCATGGTGCTAAAGGTGGTAATGTATTTGCTGTTGGAATATTATTTACAATTGGTGGAATAGCTTTAGGAGCTAGTTTATCAAATGTTAGATACTTCACAGATGCAAGTGCTGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTTCCTAAGATTGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAAAGTGTCGGGGGAAGTTGAATTCAACCATGTTGAATTCGTGTATCCATCAAGGCCAGAAAGTGTGATCTTAAATGATTTTTGCTTAAAAGTTCCATCAGGTAAAACAGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACTGTAATATCGCTTTTGCAAAGGTTTTATGATCCAATTGGTGGAGAGATTCTTTTTGATGGAGTTGCTATTCATAAGTTGCAACTCAAATGGCTTAGATCTCAAATGGGATTGGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAGGAGAATATACTTTTTGGTAGAGAGGATGCAACATATGAAGATGTTGTTGATGCTGCTAAAGCTTCAAATGCTCATAATTTCATTTCAATATTGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAATACAAATGTCAGGAGGACAAAAGCAGAGGATTGCCATCGCAAGAGCCATAATAAAAATGCCAAGAATTCTATTGCTAGATGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTCGTCCAACAAGCTTTAGACAAAGCTGTGGTTGGACGCACCACCATCATCATCGCTCACCGCTTATCCACCATCCAAAATGCAGACATCATTGCATTTGTTCAAAATGGTAGAATCGTAGAAACGGGATCTCACGAGAGCCTCATTCAAAACGACAATTCACTTTACACTTCCCTCGTTCGTCTCCAACAAACCAAAAATGACCAAAATGACGATACTCCATCTATCATTAGTATAGATCACATGCAAAACACAAATAGTTATAGACTCGCGACTCATTCTAGCTCCTTCGACTCAAGAACACATGGTAGTGGTGGTGGTGATATTGTTAACGATAAAAATGTTGTAGGAGATATCGTTAATAATGTAGAGGTATTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAAGAGAGGGAGAAGAAGGAGAAGGTAAAGGTTCCTTCATTTCGAAGGTTGTTGGCGATGAATTTGCCAGAGTGGAAGCATGTGAGTTTGGGGTGTTTGAACGCGATTTTATTGGGTGCTGTTCAACCTGTGTATGCATTTTCAACAGGGTCAGCTGCATCAATTTATTTTCTGGAGGACCATGATGAGATCAAGAAGCAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTTTGTCGACAATGGTTTTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAGAGGGTTAGAGAAAGAATGTTTTCAAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTGTTTGCTCCAGACTTGCCGTAGAAGCCAATCTGGTAAGATCGTTGGTGGGGGATAGATTGTCACTAATGATACAAACTATATCAGCAGTGGCAGTAACATTCACAATGGCCCTAATCATTACTTGGAGACTATCCATTGTTATGCTAGCAGTTCAGCCAATTAGCATAATATGTTTCTACGTAAGGTGTGCCCTTCTAAATAACATGTCTAGCAAAGCCATTAAGGCCCAAGATGAAAGCAGCAAAATAGCTGCTGAAGCTGTTACAAATCTAAGAACCATCACATCTTTTTCATCACAAAATAGAATCCTTAAAATGCTTGAAAAATCCCAACAAGGCCCAAGTCATGAAAGTATTAGGCAATCATGGTTTGCAGGCATTGGGCTTGCATGTTCACAAAGCATCATTTTTTGCACTAGGGCCTTAAACTTTTGGTATGGAGGAAAACTTGTGTCACAAGGATATATAACAAAAAATGCTTTTTTTGAGACTACTATGATTTGGATAAGCACTGGAAAAGTTATTGCTGAGGCTGCTAGTAGCATGACTAATGATTTTGCTAAAGGTTCCAGTGCCGTTGGATCAATTTTCGCAATCCTTGATAGGTATACAAAAATTGAGCCAGATGATATAGATGGTTACAAGGTTGAAAAATTAATAGGAGAAATTGAACTTCATGATGTACATTTTGCATATCCGGCTAGGCCTAGTATGATGATCTTTCAAGGGTTCTCTATTAAAATTGACGCCGGAAAATCAACAGCATTGGTCGGGGAAAGTGGTTCAGGAAAATCAACAATCATAGGACTAATTGAGAGATTCTATGATTCTTTGAAAGGGACGGTGACAATAGATGGTAGAGACATAAAGTCTTATAATCTAAGATCATTAAGGAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAGGGACAATATAGCATATGGAGCATATGATGATAAAGTTGATGAAAGTGAGATCATTGAGGCTGCAAAGGTTGCAAAGGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAGACATGGTGTGGTGATAAAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCCAGAGCTATATTGAAGAATCCAGAGGTGTTACTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTGCAGGATGCTTTAGAAAGGGTTATGGTTGGAAGAACAAGTGTAGTTGTGGCTCATAGGTTGAGTACTATACAAAACTGTGATCTGATTGCTGTTTTGGATAAGGGAAGTGTTGTTGAGAAAGGAACACATTCATCTTTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTACAAACAAGACCAACCAACACAATTGTTGATTCTTCCCATGAAATCAACTAA 3858 0.3779 MGGEDQKNVSFVKTKKTNNASFRSIFMHADILDWFFMVFGSLGAISDGTMVPVVVFITGQIMNSMGGFSGSSINNFVHSINENAVIVLYVACVSFVACFLEGYCWTRTAERQATRMRARYMKAVLRQEVAYFDLHVTSTSDVITNVSADSLVIQEVLSDKVPDFLKNISRFIGSYIVAFISLWRLAIVGFPFVVLLVVPGFMYKRTLMGLARKIRQEYNQAGTIVEQTISSIRTVYSFVGETKTIAAFSDALEGSVKLGLKQGLAKGLVIGINGLSFAIWALIVYYGSILVMYHGAKGGNVFAVGILFTIGGIALGASLSNVRYFTDASAAGERIMEVIKRVPKIDSENMEGEILEKVSGEVEFNHVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVISLLQRFYDPIGGEILFDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEDVVDAAKASNAHNFISILPQGYDTQVGERGIQMSGGQKQRIAIARAIIKMPRILLLDEATSALDSESERVVQQALDKAVVGRTTIIIAHRLSTIQNADIIAFVQNGRIVETGSHESLIQNDNSLYTSLVRLQQTKNDQNDDTPSIISIDHMQNTNSYRLATHSSSFDSRTHGSGGGDIVNDKNVVGDIVNNVEVFNNNNNNNNNNNNNNEEREKKEKVKVPSFRRLLAMNLPEWKHVSLGCLNAILLGAVQPVYAFSTGSAASIYFLEDHDEIKKQIRIYAFCFLGLALSTMVFNVLQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAVCSRLAVEANLVRSLVGDRLSLMIQTISAVAVTFTMALIITWRLSIVMLAVQPISIICFYVRCALLNNMSSKAIKAQDESSKIAAEAVTNLRTITSFSSQNRILKMLEKSQQGPSHESIRQSWFAGIGLACSQSIIFCTRALNFWYGGKLVSQGYITKNAFFETTMIWISTGKVIAEAASSMTNDFAKGSSAVGSIFAILDRYTKIEPDDIDGYKVEKLIGEIELHDVHFAYPARPSMMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDSLKGTVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRDNIAYGAYDDKVDESEIIEAAKVAKAHDFISSLKDGYETWCGDKGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSVVEKGTHSSLLAKGPSGAYYSLVSLQTRPTNTIVDSSHEIN 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04603 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vivi2g04603 1285 FunFam ABC transporter B family member 4 352 607 - -
Vivi2g04603 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1022 1270 IPR027417 -
Vivi2g04603 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Vivi2g04603 1285 Pfam ABC transporter 1048 1198 IPR003439 GO:0005524
Vivi2g04603 1285 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Vivi2g04603 1285 MobiDBLite consensus disorder prediction 663 685 - -
Vivi2g04603 1285 PANTHER ABC TRANSPORTER B FAMILY 13 601 IPR039421 -
Vivi2g04603 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1012 - -
Vivi2g04603 1285 FunFam ABC transporter B family member 1 24 361 - -
Vivi2g04603 1285 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016020
Vivi2g04603 1285 Gene3D - 360 605 IPR027417 -
Vivi2g04603 1285 FunFam Putative ABC transporter B family member 8 669 1017 - -
Vivi2g04603 1285 Gene3D ABC transporter type 1, transmembrane domain 86 1003 IPR036640 GO:0005524|GO:0016020
Vivi2g04603 1285 Pfam ABC transporter transmembrane region 707 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04603 1285 Pfam ABC transporter transmembrane region 42 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04603 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04603 1285 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Vivi2g04603 1285 ProSitePatterns ABC transporters family signature. 1170 1184 IPR017871 GO:0005524|GO:0016887
Vivi2g04603 1285 SUPERFAMILY ABC transporter transmembrane region 692 1013 IPR036640 GO:0005524|GO:0016020
Vivi2g04603 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1029 1267 IPR003439 GO:0005524
Vivi2g04603 1285 SMART AAA_5 1056 1250 IPR003593 GO:0016887
Vivi2g04603 1285 SMART AAA_5 389 561 IPR003593 GO:0016887
Vivi2g04603 1285 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Vivi2g04603 1285 Gene3D - 1019 1278 IPR027417 -
Vivi2g04603 1285 FunFam ABC transporter B family member 4 1019 1276 - -
Vivi2g04603 1285 CDD ABC_MTABC3_MDL1_MDL2 1029 1270 - -
Vivi2g04603 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 712 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04603 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04603 Vivi-Chr2 162309713 162321130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04603 679 1283 Calmodulin-binding Proteins AT2G36910 35.065 6.48e-110 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04603 K05658 - gmx:100807709 1862.04