Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04602 ATGGGAGGTGACGATCTTATAAATGTCTCCATTGTTAAAAAGAAGAAAACAAAGAATGTTTCTTTTAGGTCAATTTTCATGCATGCTGATATTCTAGATTGGTTCTTCATGGTATTTGGTTCTTTGGGGGCAATCAGTGACGGCATAATGGTACCTTTGGTGGTGTTTATCACAAGCAAAATCATGAACTCTATGGGTGGTTTTTCTGCCTCAGCAAGCAACAACTTTGTTCATAGCATCAATGAGAATGCAGTTGCTGTGTTATATGTGGCTTGTGCCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAGAGACAAGCTGCAAGAATGAGAGTTAGGTACATAAAAGCAGTTTTAAGACAAGAAGTAGCATACTTCGATTTGCATGTTACAAGTACATCAGAAGTCATCACTAGCGTGTCTACCGACACTCTAGTAATTCAAGATGTTCTGAGTGACAAGGTTCCAGATTTTTTGAAGAATATGTCTCGATTCATTGGGAGCTATATAGTGGCATTTATATCATTATGGAGATTGGCCATTGTTGGATTCCCTTTTGTAGTTCTACTTGTGGTTCCTGGTTTCATATATAAGAGGACTTTGATAGGGTTGGCTAGAAAAATCAGACAAGAGTATAACCAAGCTGGTACAATAGTAGAACAAACAATATCTTCTATCAGAACAGTTTATTCTTTTGTAGGAGAAACCAAAACCATAGCTGATTTCTCTGATGCCTTAGAAGGATCTGTGAAGTTGGGATTGAAACAAGGATTAGCTAAAGGCTTAGTCATTGGAATCAATGGTGTTAATTATGCTGTATGGTCTTTAATTGCATATTATGGTAGCATATTGGTCATGTATCATGGTTCTAAAGGGGGTGATGTATTTGCAGTTGGATCATTATTTACCGTTGGTGGAACGGCTTTAGGATCTAGTTTAACAAATGTGAGATACTTCGCAGATGCAAGCGCTGCAGGAGAAAGAATAATGGAAGTAATAAAAAGAGTTCCAAAGATTGATTCAGAAAACACGGAAGGTGAAATTCTAGAGAAAGTGTTTGGGGAAGTTGAATTCAACCATGTTGATTTTGTGTATCCGTCAAGGCCAGAAAGTGTGATCTTAAATGATTTTTGCTTAAAGGTTCCATCAGGTAAAACAGTAGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACTGTAATATCGCTTTTGCAAAGGTTTTATGATCCAATTGGTGGAGAGATTCTTTTTGATGGAGTTGCTATTCATAAGTTGCAACTCAAATGGTTTAGATCTCAAATGGGATTGGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGATGTTGTTGATGCTGCTAAAGCTTCAAATGCTCATAATTTCATTTCAAAGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGCGGAATACAAATGTCAGGAGGACAAAAGCAGAGGATTGCCATCGCAAGAGCCATAATAAAAATGCCAAGAATTCTATTGCTAGATGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTCGTCCAACAAGCTCTAGACAAAGCCGTGGTTGGACGCACCACCATCATCATCGCTCACCGCTTATCCACCATCCAAAATGCAGACATCATTGCATTCGTTCAAAATGGTAAGATCGTGGAAACGGGATCTCACGAGAGCCTCATTCAAAATGACAATTCGCTTTACACTTCCCTCGTTCGTATCCAGCAAACCAAAAATGACCAAAACGAAGATACTCCATCTATCATTAATATAGATCACATGCAAAACACAAATAGTTATAGACTCGCAACACATTCTAGCTCTTTTGACTCAATGACACGTGGTGGTGGGGATATTGTTAACGATAAAAATGTTGTTGGAGATATCGTTAATGATGTTGAGGTATTTAATAATAATATCAATAATGATAAGGAGAGGGAGAAGAAGGAGAAGGTAAAGGTTCCTTCGTTTCGAAGGTTGTTGGCAATGAATTTTCCAGAGTGGAAGCAAGTGTGTTTGGGTTGTTTGAGCGCGATTTTCTTCGGTGCGGTTAATCCTTTGTATACATTTTCAACAGGGTCAGTTGCATCAGTTTATTTTCTGGAGGACCATGATGAGATCAAGAAACAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTGTGTCTTCATTGGTTTTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAAAGGGTTAGAGAAAGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTGTTTGCTCCAGACTTGCCAAAGAAGCCAATGTGGTAAGATCGTTGGTGGGGGATAGATTGTCACTAACGATACAAACTATATCAGCAGTGGCAGTAACATTCACAATGGGCCTAATCATTACTTGGAGACTATCCATTGTTATGATAGCAGTTCAGCCAATTAGCATAATTTGTTTCTACATAAAGTGTGTCCTTCTAAATAACATGTCAAGCAAAGCCATTAAGGCCCAAGATGAAAGTAGCAAAATAGCTGTTGAAGCTGTTTCAAATCTAAGAACCATCACATCTTTTTCATCACAAAATAGAATCCTTAAAATGCTTGAAAAATCCCAACAAGGCCCGAGTCATGAAAATATTAGACAATCATGGTTTGCAGGTATTGGGCTTGCATGTTCACAAAGCCTCATCTTTTGCACTAGAGCCTTAAACTTTTGGTATGGAGGAAAACTTGTGTCGCAAGGATATATAACAAAAAATGCATTTTTTGAGACTACTATGATTTGGATAAGCACTGGAAAAGTTATTGGTGATGCTGCTAGTAGCATGACTAATGATTTTGCTAAAGCTTCTAGTGCTGTTGGATCGGTTTTCGCAGTCCTTGATAGGTATACAAAAATTGAGCCAGATGATTTACAAGGTTACAAGGTTGAAAAACTAATCGGAAAAATTGAACTTCATGACGTTCATTTTGCATATCCAGCTAGGCCTAATTTGATGATCTTTCAAGGGTTCTCTATTAAAATTGACGCCGGAAAATCAACAGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCAACAATCATAGGACTAATTGAGAGATTTTATGATCCTTTTAAAGGGATGGTGACAATAGATGGTAGAGACATAAAGTCTTATAATCTAAGATCATTAAGGAAACACATTGCACTTGTGAATCAAGAACCAACATTGTTTGGTGGTACCATAAGGGACAATATAGCATATGGAGCATATGATGATAAAGTTGATGAAAGTGAGATCATTGAGGCTGCAAAGGCTGCAAAGGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAGACATGGTGTGGTGATAAAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAGGTGTTACTTTTGGATGAAGCAACTAGTGCACTTGATAGTCAATCAGAGAAACTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAACTGTGATCTGATTGCTGTTTTGGATAAGGGAAGTGTTGTTGAAAAAGGAACACATTCATCTTTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTACAAAGAAGACCAACCAACACAATTGTCCATTCTTCACATGAAATCAACTAA 3831 0.3801 MGGDDLINVSIVKKKKTKNVSFRSIFMHADILDWFFMVFGSLGAISDGIMVPLVVFITSKIMNSMGGFSASASNNFVHSINENAVAVLYVACASFVACFLEGYCWTRTGERQAARMRVRYIKAVLRQEVAYFDLHVTSTSEVITSVSTDTLVIQDVLSDKVPDFLKNMSRFIGSYIVAFISLWRLAIVGFPFVVLLVVPGFIYKRTLIGLARKIRQEYNQAGTIVEQTISSIRTVYSFVGETKTIADFSDALEGSVKLGLKQGLAKGLVIGINGVNYAVWSLIAYYGSILVMYHGSKGGDVFAVGSLFTVGGTALGSSLTNVRYFADASAAGERIMEVIKRVPKIDSENTEGEILEKVFGEVEFNHVDFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVISLLQRFYDPIGGEILFDGVAIHKLQLKWFRSQMGLVSQEPALFATSIKENILFGREDATYEDVVDAAKASNAHNFISKLPQGYDTQVGESGIQMSGGQKQRIAIARAIIKMPRILLLDEATSALDSESERVVQQALDKAVVGRTTIIIAHRLSTIQNADIIAFVQNGKIVETGSHESLIQNDNSLYTSLVRIQQTKNDQNEDTPSIINIDHMQNTNSYRLATHSSSFDSMTRGGGDIVNDKNVVGDIVNDVEVFNNNINNDKEREKKEKVKVPSFRRLLAMNFPEWKQVCLGCLSAIFFGAVNPLYTFSTGSVASVYFLEDHDEIKKQIRIYAFCFLGLAVSSLVFNVLQHYSFAYMGEYLTKRVRERMLSKILTFEVGWFDEDQNSTGAVCSRLAKEANVVRSLVGDRLSLTIQTISAVAVTFTMGLIITWRLSIVMIAVQPISIICFYIKCVLLNNMSSKAIKAQDESSKIAVEAVSNLRTITSFSSQNRILKMLEKSQQGPSHENIRQSWFAGIGLACSQSLIFCTRALNFWYGGKLVSQGYITKNAFFETTMIWISTGKVIGDAASSMTNDFAKASSAVGSVFAVLDRYTKIEPDDLQGYKVEKLIGKIELHDVHFAYPARPNLMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGMVTIDGRDIKSYNLRSLRKHIALVNQEPTLFGGTIRDNIAYGAYDDKVDESEIIEAAKAAKAHDFISSLKDGYETWCGDKGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSVVEKGTHSSLLAKGPSGAYYSLVSLQRRPTNTIVHSSHEIN 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04602 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vivi2g04602 1276 FunFam ABC transporter B family member 1 24 359 - -
Vivi2g04602 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Vivi2g04602 1276 FunFam ABC transporter B family member 4 1010 1267 - -
Vivi2g04602 1276 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524|GO:0016887
Vivi2g04602 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 600 IPR027417 -
Vivi2g04602 1276 CDD ABC_MTABC3_MDL1_MDL2 1020 1261 - -
Vivi2g04602 1276 Pfam ABC transporter 1039 1189 IPR003439 GO:0005524
Vivi2g04602 1276 Pfam ABC transporter transmembrane region 696 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04602 1276 Pfam ABC transporter transmembrane region 41 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04602 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04602 1276 Gene3D - 1010 1270 IPR027417 -
Vivi2g04602 1276 Gene3D ABC transporter type 1, transmembrane domain 25 625 IPR036640 GO:0005524|GO:0016020
Vivi2g04602 1276 FunFam ABC transporter B family member 4 352 608 - -
Vivi2g04602 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1003 - -
Vivi2g04602 1276 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Vivi2g04602 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1261 IPR027417 -
Vivi2g04602 1276 Gene3D - 352 601 IPR027417 -
Vivi2g04602 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g04602 1276 PANTHER ABC TRANSPORTER B FAMILY 13 599 IPR039421 -
Vivi2g04602 1276 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Vivi2g04602 1276 SUPERFAMILY ABC transporter transmembrane region 683 1004 IPR036640 GO:0005524|GO:0016020
Vivi2g04602 1276 SMART AAA_5 1047 1241 IPR003593 GO:0016887
Vivi2g04602 1276 SMART AAA_5 389 561 IPR003593 GO:0016887
Vivi2g04602 1276 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Vivi2g04602 1276 FunFam Putative ABC transporter B family member 8 661 1008 - -
Vivi2g04602 1276 Gene3D ABC transporter type 1, transmembrane domain 659 1008 IPR036640 GO:0005524|GO:0016020
Vivi2g04602 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1258 IPR003439 GO:0005524
Vivi2g04602 1276 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04602 Vivi-Chr2 162287117 162297845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04602 670 1274 Calmodulin-binding Proteins AT2G36910 36.007 2.75e-111 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04602 K05658 - gmx:100807709 1867.82