Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04564 ATGAATTGTGAAAGATTTGACATGACAGTTTTGATTGTGGACCATGATGCTGTTTCTTTGGGTTTAATTGCCAATTTACTCATGGCATGGCAATATAAAGTTCAAACTGCCAAAGATTCTCAGGAAGCTTTGTACATTCTCCAAGGATCTAAAGGCTTGATTGATATCATAATTTCAGAGTTCAATTTATTAGGAATGAATGGCTATGATTTTCTAAAGCTAATTAAAAATGAATTTCAAATACCTATAATAATGATGTCCGACAACAAGGAGGAAAAATTAATTTTGAACATTTTAAAAAATGGAGCAGCACATTTTATTGCAAAACCTTTTTGTGATGAAGACTTCAAAAACATTTGGAAATATGTTATGGAGGCAAAAGAAGAAAAACTATTCTTTGAAAGCCTATTTGTAACAAGTGAAGAACAAAAGACTAAAAATAAGCATAGCAAGAGAAAGATAAATGACAAAGATCAAGTAGAAGGAGATTCTCAAGTTTCCAAGAAAACAAAGCTTGTTTGGACTCCAGAACTTCATAATCTATTTATGTTTGCAATTAAGCAAATTGGATTGCATAAGGTTGTTCCCAAGAAAATTCTAAAGATTATGAATGTCCCAAACTTGACCAGGGAAAATGTAGCTAGCCACTTACAGAAATATCGCAAATTTCTGCGTGATGTCAATGAGAAAGGAATGATGGGAGGAATATCACAAAGAGCATTAAGGTCTAGGTTTGCATCGGGTCTTCCCATGTCATTAATAAAGACTATGCAAGAAAAAAGAGCAAACAAGTTTCACACCCCAACTTTTGAAAATTTGCAAACATTATCATATCAAACCGAAAATCAAAACAATTATTTTAACCTTTTCAATAGATTTCCATCGCGCCAAATTAATAATTTCCCTTATGTACAAAAAGTCCCAAATCTTCAATATTTGAATCAATTTAGTCTTGGAAAATCAAATCTAGAATCTAATATTGGTTCGAACAATAGTATCTATGACCAAAATTCGATTGGAATAAACTCTTCGAATAGTTCATTTTTTCCGGTAAAGAATCTACTATATGATGGCGGCTCTAGTTCTAGTAGCTTTTCATCATCCGGAGGTGGACAAGGATGGACTACTTCTTCAAGAACTTCATCTTCAAGTTTCTTAACAAGAGACTTGAACTTCAATGACATGAGTCTTGATAATAAGTCATTCAAAGGTGGTAATGAAATCTCTCCTCAAGCTGAAATCACATCATGTAGGATGAAAGAGTTACCAATAAGTTCAAATGAAAGTTCTAAAAAGTTGGAAGGAAATAATGGATTTTCAAATGAGGGATCATCTGATAGATTTACAGGAGACAAAGAGTCTAAAAAAAGTACATCAACTAATGATCTGGAATTTGATATGGATATTGTTGAAGCCTTGTTTGGTACTATAGATGACTAA 1440 0.3257 MNCERFDMTVLIVDHDAVSLGLIANLLMAWQYKVQTAKDSQEALYILQGSKGLIDIIISEFNLLGMNGYDFLKLIKNEFQIPIIMMSDNKEEKLILNILKNGAAHFIAKPFCDEDFKNIWKYVMEAKEEKLFFESLFVTSEEQKTKNKHSKRKINDKDQVEGDSQVSKKTKLVWTPELHNLFMFAIKQIGLHKVVPKKILKIMNVPNLTRENVASHLQKYRKFLRDVNEKGMMGGISQRALRSRFASGLPMSLIKTMQEKRANKFHTPTFENLQTLSYQTENQNNYFNLFNRFPSRQINNFPYVQKVPNLQYLNQFSLGKSNLESNIGSNNSIYDQNSIGINSSNSSFFPVKNLLYDGGSSSSSFSSSGGGQGWTTSSRTSSSSFLTRDLNFNDMSLDNKSFKGGNEISPQAEITSCRMKELPISSNESSKKLEGNNGFSNEGSSDRFTGDKESKKSTSTNDLEFDMDIVEALFGTIDD 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04564 479 Gene3D - 165 226 - -
Vivi2g04564 479 SUPERFAMILY CheY-like 7 127 IPR011006 -
Vivi2g04564 479 SMART REC_2 8 120 IPR001789 GO:0000160
Vivi2g04564 479 MobiDBLite consensus disorder prediction 401 462 - -
Vivi2g04564 479 Pfam Response regulator receiver domain 10 117 IPR001789 GO:0000160
Vivi2g04564 479 Pfam Myb-like DNA-binding domain 173 221 IPR001005 -
Vivi2g04564 479 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 325 IPR045279 GO:0009736
Vivi2g04564 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 225 IPR017930 -
Vivi2g04564 479 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vivi2g04564 479 FunFam Two-component response regulator 165 228 - -
Vivi2g04564 479 MobiDBLite consensus disorder prediction 446 462 - -
Vivi2g04564 479 SUPERFAMILY Homeodomain-like 167 226 IPR009057 -
Vivi2g04564 479 Gene3D - 8 149 - -
Vivi2g04564 479 MobiDBLite consensus disorder prediction 420 445 - -
Vivi2g04564 479 NCBIfam myb-like DNA-binding domain, SHAQKYF class 169 222 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04564 Vivi-Chr2 161333630 161338084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04564 8 245 Response Regulator Gene Family AT4G31920 35.628 5.08e-43 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi2g04564 Response_reg 3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04564 - K14491 vvo:131650466 896.73