Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04560 ATGTATGGGTTCGGTCGTGAGAAGTGGAAACACAATCGGCACATGTGGCCTGTACCTTCTAACGCGACCACTGTAGTCACCGTTTCTTCACCGTCGCAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGACTGTGCACTTTTCAAACCACCCCAGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACATTCGATAAAGAAGAAAGTCCAACTTTAGAAGTGAATTGGTTTTACCGACCTGCTGATTTGAATCTCTCTAAAGGGATTGTGCTGGAAGCTGCACCAAACGAAGTGTTCTACTCCTTTCACAAGGATGAGATACATGCTGCATCATTACTCCATCCTTGTAAAGTCGCATTTCTCCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTTTGTAGGCGAGTGTATGACATTGACAACAATTGTTTACGGTGGCTAACCGATAAGGACTACATTAATGAACAGCAGGAAGAAGTTTACCAGCTTTTAGATAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACGTCAACACAGTCATTGAAATCTAGTTCTGATAACATTCAAAATAGTTCTTCCTTTGGTGTACAGGGTAAGGGAAAAAAGAGAGAAAGAGGTGATCAGGGATCTGATTCATCAAAAAAAGAGCGATTATTTAAAGTAGAAGATGGAGATTCTGGTCACTTTAGACCGGAGAGCATGCTAAGGTCTGAGATTGCTAAAATCACTGATAATAAAGGTGGGCTTGTGGACTCTGACGGGGTTAAAAGACTTGTGCAACTCATGCAACCTGACAGTGCTGATAAAAAAATAGATTTGGCTGGGCGAATAATGCTTGTGGACGTAATATCACTCACAGAGCGGTATGACTGTCTTTGCTGGTTCGTACAGATTCGCGGTTTGCCTGTGTTAGATGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGCGATGGTAATGTCGATAAGTCTGAAGAGTTTTTGTTAGCTTTACTTCGTGCATTAGATAATCTTCCTGTGAACCTTCATGCACTACAAACCTGTAATGTTGGAAAATCTGTTAATAATTTACGTAGCCACAAAAATTCTGAAATTCAGAGGAAAGCCAGGACTTTGGTGGACACATGGAAGAAGCGTGTTGAAGCTGAAATGAATATGACTGATACAAAAACTGGTTCGACCCGTGCTGTTTCTTGGCCTGCAAAGCCAGCACCATCAGATGTTTCTCACTCTGGAAATAGGAAAACTGGAGGATCCTCTGAGAATGTTGCAAAGAGCTCTGCTATTCAACCTTCAACATCCAAAAATTCCCAATCTAAACTTAATTCTGGAGAAGTAGCATCGAAGTTTTCTTCATCCCCTGGCTCAACCAAATCGGCGACTGCCTCAGTATGCAGCAACTCAAAAGATCAAAATGTTAAACTTGTTGTTTGTGCAACGTCAGATCTACCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAACAACAGCAGATCTTGTTCTACTGAACATGCAAAGGCTTTCGGTTCCTGCCGGGAAGATGCAAAGAGCTCCACTGCAGTGTCAATGGGTGTGAACAAAGTACCTGGTGGTGCATCCCGATCTCGGAAGTCGAGTAATGGTGTACATGGAGCTGGTGTTGCTGTAGTTCAGAAGGATCATAATTCTGTCAAGAACTCAGCAAGAAATTCACCTTCTGATAAAGTTTCCCCATCACGAATGTCCCATGAAAAACCACCAGATCAGCCCCTTACTGATCAAGGGCATAACCAGCGACTGATTCTCAGGTTGCCTAACACCGGCCGCAGTCCTTCAAGGGGAGCTAGCGGGGGTGCTTTTGAAGAAGCTGCTTTTGCATGTGGCAAAACCTCACCTCCTGCCGACAACAAGAAGGAGAACCAGGACAGGAGAGTTAAAGCTAAAATTGATTGTTTACAGACCCATGTGTCAAATGTGATAAATGATGCATCCAATGCTAATGACACTACTGGTTGTGATGAAGCTAAGGGCTCTCCGTCGGTGGGTGAGCGATGTAGGGTTAATGATGATGGTGATAAAGCAGCAGAAATACCAAAAACATGTTCTTCAACTGGATTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAGAGCTGTGTGAAATTTTCAGAAGCAAGTACCTCCGTGTCCCCTGGAGATGATGGGATGAATCTGCTTGCTTCCGTGGCTGCAGGAGAAATGTCCAGATCTGAAAACGTTTCGCCTCTGCCTTCACCCGAGAGGAAGTCTCCTGCAGCTGATGAATTAAGCTCAGAAAATGATTCCAAGTTAAGACATTCTCTTGAAGGAGTTGCTCGCACTCTTGGACAGTCTGATGGTGGGGTTACTGGAGAGCATACTCGGAATACTGTGGAGCCAGTGCAATTCAAAAAGGATTCTAGGCATCCTGTGATGACAATACCGCATGATTTTTCAGATGGTGAAGCCGTTTCATCTAGCCGTCTGGAGAAAACTGGTGACAGCAAAACTCAAATAAATTTCTCTACTACAGATGCGATACAAAATGCTGAAGTTCCATGCTTACGACCAGATACCAAAGGGGAGACTTCTGAAACTGTGTTTCCAGGTAGAAAGGAGACTCATGCAGAAGTTGAAGGAGCAGAGCGTTTTCAGGAGCAGAGGGAATCAGGAGCTCAATGGGCTAAAAACTGCAGTAGTTCTAGCTCTAAATTGAAGTCGGGGACTTCCTCATTTGATGATGATCAGAAGATTTCTAACATGGTTGGCGGTATTGCAGAGCACGAAAAAATGTTGGTTTCAGAAACAGTTGCAAGTGGTATGAATGAAAATGATCAAGGTAAAAGATCCCCCGAGTTATCTTCAGGCGCAGATAGTAAGACCCAGATCGGTGCAGATAAAGTGACAGGTATTGTTATGCCTGTGCAAAAAGGCTCACCAGTTACAGATAACTGCGAGTCTATTGATATAAAAAGGGAGTCACCTTCTTCTGGTAATGCTTTGACGGTAGCCAGGGATGAAAATGATAATCGTGTGATGCCAGTTGATATTAAGCCTGATGTAAAACGAATGGATCTGGATTCAGCAGTTGCAGATGATGTTAATGAACGTTCTGAAGAGAATTTTGGTAGAAAAGAGGTTATTGGCTCTGGTTCATTAGCTCACCCAGATTTACCAATTCCTGTAAAAGAGAACGAAGATCCGAAACCATGTGATTCTAATCTTGAAAGAAAGAAATCTGTAGTTGCTGAGGAGTTGATTGCAGGCAATGCTAATCCATCCCCAATTGCTTCTACTTCTGATGCAGCTGTAAAACTGGACTTTGATTTAAATGAGGGATACCCTGTTGAGGATGTAGGCCAGGGGGATATTGTTAGACCGGAAGAACCTATCAGTTCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCCATTCCTTCCCTCTCTGGGGCCTTCCATGCTTCAATTACAGTAGCTTCTGCTGCCAAAGGACCGGTTGTTCCGCCAGAAAATCCATTGCGAAGTAAGGGCGAACTTGGGTGGAAAGGGTCAGCTGCTACAAGTGCATTCCGGCCAGCTGAACCTAGGAAAAATGCTGAGATGCTATCAAATACTGTTGATATTCCATCAGTCGACACCACCTCAGTCAAACAAGACCGTGCACCCTTAGATTTTGATTTAAATGTGGCAGATGAAATCAGTTTTGAGGATGTTGCTTACCGGGGTTCCTTAGAGTCCGGTACTCATGACCGCAGCTCTGTGGGATTTGATCTTGATCTAAACAGGTTAGACGAGACTCCTGAAGCTGGATCTTTCTCTATGGGTAAAATGGATATTCCTTTACCAAGTAAACAACCTTCATTGTCCAGTGGGTTATCTAATGGTGGAAGTGTCTCCAGAGACTTCGATTTAAATAATGGACCAGGCCTTGATGAAGTTAGCACCGAAGTCCCAACTCGCACTCTGCAGATGAAAAGTACTATCCCATTTTCAAGTTCTGTTCATGGCACCAGAACAAATAATGCAGAATTTGGAAATTATTCTTCATGGTTTCCTCCGGGCAATTCGTATTCTGCAATTACTGTCCCACCAATTCTGACTGGTCGAGGGGAGCAGAGTTATGTTGGCGGTTCTGGGACACAGCGCATCATAGGTTCCACAGGTAGCACGCCTTTTAGTCCTGAAATTTACAGAGGGCCGGTGCTCTCATCCTCTCCAGCTGTTGCATATCCACCTTCTACTCCCTTTCCATATCCAGGATTTCCATTTGAAACCAATTTTCCGTTATCTTCAAATGCCTTTTCTGGTTGTTCAACACCATTTATGGATTCAACAAACGTGCCCGGACTTTGCTTTCCTACCATGCCCTCACAGCCCATTGGGCCTGGTGGCGTTGTCTCATCTACATATCCCCGTCCCTATGTTATGAGTCTTCCCGGTGGTACAAGCAATGTAATTCCCGACAGCAGAAAATGGGGTAGTCAGAGTCTGGATCTTAATTCAGGCCCTGGTGTTACAGATACCGAGCGCAGAGATGACAGATTGCCTTCAGGATTGAGACAGATGCCTGTCCCCAGTCAACAACAAGCCTTGATGGAGGATCACTTGAAGATGTTTCAGATGGCCGGTGCATTAAAAAGAAAAGAACCTGATGGTGGTTGGGATGGAACTGATCGATTCAGTTACAAACATCCCTCATGGCAATAG 4812 0.4422 MYGFGREKWKHNRHMWPVPSNATTVVTVSSPSQFICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLTFDKEESPTLEVNWFYRPADLNLSKGIVLEAAPNEVFYSFHKDEIHAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIDNNCLRWLTDKDYINEQQEEVYQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSSSDNIQNSSSFGVQGKGKKRERGDQGSDSSKKERLFKVEDGDSGHFRPESMLRSEIAKITDNKGGLVDSDGVKRLVQLMQPDSADKKIDLAGRIMLVDVISLTERYDCLCWFVQIRGLPVLDEWLQEVHKGKIGDGNVDKSEEFLLALLRALDNLPVNLHALQTCNVGKSVNNLRSHKNSEIQRKARTLVDTWKKRVEAEMNMTDTKTGSTRAVSWPAKPAPSDVSHSGNRKTGGSSENVAKSSAIQPSTSKNSQSKLNSGEVASKFSSSPGSTKSATASVCSNSKDQNVKLVVCATSDLPLTPIKEERSSSSSQSQNNSRSCSTEHAKAFGSCREDAKSSTAVSMGVNKVPGGASRSRKSSNGVHGAGVAVVQKDHNSVKNSARNSPSDKVSPSRMSHEKPPDQPLTDQGHNQRLILRLPNTGRSPSRGASGGAFEEAAFACGKTSPPADNKKENQDRRVKAKIDCLQTHVSNVINDASNANDTTGCDEAKGSPSVGERCRVNDDGDKAAEIPKTCSSTGFVSRSGQTYDASLSPMNALVESCVKFSEASTSVSPGDDGMNLLASVAAGEMSRSENVSPLPSPERKSPAADELSSENDSKLRHSLEGVARTLGQSDGGVTGEHTRNTVEPVQFKKDSRHPVMTIPHDFSDGEAVSSSRLEKTGDSKTQINFSTTDAIQNAEVPCLRPDTKGETSETVFPGRKETHAEVEGAERFQEQRESGAQWAKNCSSSSSKLKSGTSSFDDDQKISNMVGGIAEHEKMLVSETVASGMNENDQGKRSPELSSGADSKTQIGADKVTGIVMPVQKGSPVTDNCESIDIKRESPSSGNALTVARDENDNRVMPVDIKPDVKRMDLDSAVADDVNERSEENFGRKEVIGSGSLAHPDLPIPVKENEDPKPCDSNLERKKSVVAEELIAGNANPSPIASTSDAAVKLDFDLNEGYPVEDVGQGDIVRPEEPISSSAVHVPCPLPFPIPSLSGAFHASITVASAAKGPVVPPENPLRSKGELGWKGSAATSAFRPAEPRKNAEMLSNTVDIPSVDTTSVKQDRAPLDFDLNVADEISFEDVAYRGSLESGTHDRSSVGFDLDLNRLDETPEAGSFSMGKMDIPLPSKQPSLSSGLSNGGSVSRDFDLNNGPGLDEVSTEVPTRTLQMKSTIPFSSSVHGTRTNNAEFGNYSSWFPPGNSYSAITVPPILTGRGEQSYVGGSGTQRIIGSTGSTPFSPEIYRGPVLSSSPAVAYPPSTPFPYPGFPFETNFPLSSNAFSGCSTPFMDSTNVPGLCFPTMPSQPIGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVTDTERRDDRLPSGLRQMPVPSQQQALMEDHLKMFQMAGALKRKEPDGGWDGTDRFSYKHPSWQ 1603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04560 1603 CDD TFIIS_I 332 401 - -
Vivi2g04560 1603 ProSiteProfiles TFIIS N-terminal domain profile. 322 403 IPR017923 -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 403 486 - -
Vivi2g04560 1603 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 310 413 IPR035441 -
Vivi2g04560 1603 SMART BAH_4 40 155 IPR001025 GO:0003682
Vivi2g04560 1603 SMART TFS2_5 328 402 IPR003617 GO:0005634
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 1524 1561 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 1094 1109 - -
Vivi2g04560 1603 Pfam BAH domain 41 146 IPR001025 GO:0003682
Vivi2g04560 1603 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Vivi2g04560 1603 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1603 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 537 615 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 899 920 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 189 217 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 508 527 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 848 868 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 1080 1109 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 1198 1226 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 1582 1603 - -
Vivi2g04560 1603 Gene3D - 24 247 IPR043151 -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 429 486 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 179 246 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 969 1042 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 971 996 - -
Vivi2g04560 1603 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 273 404 IPR035441 -
Vivi2g04560 1603 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 924 950 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 579 596 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 889 950 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 774 806 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 1524 1538 - -
Vivi2g04560 1603 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04560 Vivi-Chr2 161126276 161133685 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi2g04560 BAH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04560 - - gmx:112998769 2259.18