Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04558 ATGTCTTCATCTTCAGAAGGTTACGCGATCGAGCTCTACATGGATCCCGCACTCGAAAACCAAGTCTTGAAAGCCTGGAACGTCCTCGCTCGCCGCCAAATCAGCACGGAGTTAATCGAAATCGGATCACGCCCACACATCACACTCTTCTCAACTCCCTTCCTTCTAGAACCTTCCAAACTCGAATCCCTTCTCAAATCCCTAACTTCCAAATTCGATCCGTTCACTCTCTCTTTCTCTTCGATCTCTTCGTTCTCCAACGATAACAACGTGCTTTTTCTCTCACCTACTCCGTCGATTTCTCTGCTTAATTTTCATTCGCATCTTGTGGATGCGATTGCCAAGGAAGGGATTGAGGTTTCTGAGGAGTTTTCGGTGGGGAATTGGATTCCTCATTGCTCCGTTGCGAATTGTGTGCCGAAACAGAGAATGTCTGAGGCTTTTTCGCTTCTTAGAGAGCTTAAATTGCCGGTTGCTGGTTATGCTGTTGATGTTGCGCTCGTGCAATTCTCGCCGGTTCGGGAGATTTTCTCCTTTGTGCTTGGTAACAACAGTAATATTATAGAGAATTGA 573 0.4625 MSSSSEGYAIELYMDPALENQVLKAWNVLARRQISTELIEIGSRPHITLFSTPFLLEPSKLESLLKSLTSKFDPFTLSFSSISSFSNDNNVLFLSPTPSISLLNFHSHLVDAIAKEGIEVSEEFSVGNWIPHCSVANCVPKQRMSEAFSLLRELKLPVAGYAVDVALVQFSPVREIFSFVLGNNSNIIEN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04558 190 Gene3D Cyclic phosphodiesterase 8 183 - -
Vivi2g04558 190 Pfam 2'-5' RNA ligase superfamily 44 168 - -
Vivi2g04558 190 SUPERFAMILY LigT-like 4 145 IPR009097 -
Vivi2g04558 190 PANTHER - 4 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04558 Vivi-Chr2 161072399 161073216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04558 5 184 Calmodulin-binding Proteins AT5G40190 64.444 5.91e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04558 - - mtr:25495217 254.218