Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04545 ATGTCAGAAACTATGTATCCTAAATTGTTATTTGAACATACCCATTTAAGGATTCATCAAAAAGATGAATACTTTATGAATTTTCCACCACCTTTACCACCACCACCACCACCACCATCATTACCAACACAATCTTCACCAAGTTCTTCAACAATAACACCACCAACATCTTCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCTGTTCTTTTTTTCATATCTGGTTTACTTCATTTACTTGTTAGATTTCTCATAAAGCATCCATCTTCATCCTCTTCTAATCAATCTAATAGACAACAACACCATAACGAGATTTCAACTTCTGATGCACTTCAAAGACAGCTTCAACAGCTTTTCCATCTTCATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAATTCAAGGAAATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGCGAGTTTTCGGAGAAAGATAAGCTGAGATTGTTGCCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGTTGCTTTCGAATTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGGTTTTCTATTGAAAACCCGATGTTCGATTTCGATGATCTTAGAGAAGACGATGGTTGTCCTTGTAACGGAGAAAACAGATTTGGTAATAGACAAAAGGAAATTGTTGTTGAAGATGTTGTTGATAAAGGGGTTTTGCCAGTTCGGCTCGGGAAATTCAAGAAGATGAATGTGGAAGTGGGTCGAGAGAACGAAGAAGTCGGTGAAACGAGTAGTAGTAAATTGGATGCAAGAAGATGTTACTCAATGGGATCTTATCAATATGTGGTTGGAAATTCTGAGTTAAGGGTAACTTTGGATGCATTAAACCACGAAAGTAAAGTTCATCAAGATAGAAGAATGAACAAAGGAATCGAGAATGGTGAGAATCTTTGTGTGGAAAGTGATTTGGAAGGAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCGATTTCGAAGATTTGGTTGTGGCCAAGGAAGGGGAAATTTTCTTCAAGTTCTTTAGAAGCTCATAATGGTATGGCATTGCCATCTTATCTTAACAAAGATTTGCAGCATCATGGAATGAGGGAAACAGATGGTGTATGA 1197 0.3651 MSETMYPKLLFEHTHLRIHQKDEYFMNFPPPLPPPPPPPSLPTQSSPSSSTITPPTSSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSSSNQSNRQQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTNGFSIENPMFDFDDLREDDGCPCNGENRFGNRQKEIVVEDVVDKGVLPVRLGKFKKMNVEVGRENEEVGETSSSKLDARRCYSMGSYQYVVGNSELRVTLDALNHESKVHQDRRMNKGIENGENLCVESDLEGKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMALPSYLNKDLQHHGMRETDGV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04545 398 SUPERFAMILY RING/U-box 139 207 - -
Vivi2g04545 398 FunFam RING-H2 finger protein ATL46 122 207 - -
Vivi2g04545 398 SMART ring_2 160 201 IPR001841 -
Vivi2g04545 398 CDD RING-H2_EL5-like 159 202 - -
Vivi2g04545 398 MobiDBLite consensus disorder prediction 45 63 - -
Vivi2g04545 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 60 358 - -
Vivi2g04545 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 209 IPR013083 -
Vivi2g04545 398 MobiDBLite consensus disorder prediction 25 63 - -
Vivi2g04545 398 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Vivi2g04545 398 MobiDBLite consensus disorder prediction 27 44 - -
Vivi2g04545 398 Pfam Ring finger domain 159 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04545 Vivi-Chr2 160841507 160844229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04545 56 370 C3H Transcription Factor Family AT2G18650 41.127 3.56e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04545 - - gmx:100806337 470.7