Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g04537 | ATGCTTCTCCGCCTAGTGATGTTGATGGTGAAGAGTTGCATGATGCGAGTGACATATTCAACCTTCTACAACGGGAGTGCGTTTGGCTTGCAAAGGGCATCTGGAGTTATGACACATGCTGTTAGAGTGGGTTTTGAAGATATATTAAATCACACCCAAGCAATGGCTAGAAGCTTTGAGGAAGTACCATCTCAGACTCAGAGTCCAAATGAGTCAATTTTGCTGGCTCTTAGAGATTTTATATCTGAAAGGCATGGTGTACTGGAGGAAGGTTGGCGAGTGGAACTTAGACAATCAATGATCAGCCCTGACCTGTATGCAGTTTATTGTGCCCCTGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTCCATGGAATCTGAAATAAAGAATGAAATGTCTCTTTCTTTAGGTGGGCCTCACATATCCAGAAAACGAAAGTCTTCTAGAACTCTGACAGCCAATGGTTATGCAGAAAAGCAGGGAACCATGATCAATAGTAATTATAAGGATTGCTCTTCTGATGGTTTCATTATGGAATGTGCTAATGCTCAGGGGACTATCCCAAAAGCCTCTGAGATTGGAAGAAAAGAGAACAGTCACACCGACCCTGATCAATCCGCTGATGGACTTCCTCTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTACCTTTCCTGTGGGTTATAGATCTTCCTGGCATGACAAGATTACTGGCTCTCTTTTTACGTGCGAAGTTTTGGATGGTGGTGATTCTGGGCCTTTATTTAGGATTAAAAGGTGTTCATGTTCAAAGTTTCCTATTCCAGATGGGTCAACCATCCTTTCAATGCAAAGTCATTGTCAATTTGTAAGCGAAACCAATGAATGTCGGAGAGAGACTAATGATAGTATGGATTTCGACGGTGACGAGAGTATCCAAATGATCCTTTTAGAACCCTGTGCCCCAACAGAAAATGACATCTTAAGTTGTGTTGCCAGTTGCTCAAATGAAACATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCGGTTCGAGATAATACTGAAAATTCATTTGATGATAATATGGATTTTGGTGATGAAATTGGTGATATTTTGGTTGAAGAGCAGTCCCCATTCTCAGCATGGAAACTTATTTCTCAAAAGTTAGTCAGTGCTTGCAAGGATATCTGCAAGGAGAAAGGAACTCTTAAATTATATTGTAAACATGTTGTAAGTGAAATGGGCTTACATAAATGGGATTTAAGGAATGGAAAAATTGATACCCACTTCCCTTCGTTGGATAAATTTTGTGGTTATCCTGGGTTTGTCGGCATTCCAGATACACTTTATGCAGACAGTGATCTGACTGGTCTCTATGAGCTGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGGTTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGCGTGCAGGATTCTTTGCAATATGAACTTTTGAGTAGTAGAACTAATAGCTCTTCATTACCAACAGTGGAGAATGGTTTCCTAGTGGTTGAATCTAAAGGTCAATCAAAATATCAAGATGAAGCAGCAGCTGTTCAAGGTTTATATAGAAGGCCTAAGAAGGCAAGATTGACTGAAAGTTTTGTTAAGGAAGATCAATGTCCACCTCCCGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATTGGTGACATTTTTGAGGTTTGGGAGCATTTAGATAGATTTCATGAAATTCTAGACCTTAAAGAACCATTGTTATTGGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGAGTTCCCTGAGAAGTTGGAGAGGGGAATGGGTAGAAATCAAGTTTTATGTTCACAAGGGGGTAATGATGATTACCGACTAGTATGTGAAGCTGGTCCATCAGGTTCCACAGAAAGTTCTTTTATTCAAGTGGAAACAGAAGCTATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCCTTCACCTATGTCAGATGCTTTGGTATAGCATTGACCAAGGCTCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCTGCTCTGGTGGATCCAAATTCTGAACCCGGAGAGACTCGGGGTAGACGAGGAAGAAGGAAAGATATAGATAGTGCAGTTCCTGCCAAACGAACTAAAGTCAATATGCTTCCTATTAATGAATTGACATGGCCAGAACTAGCTCGTAGATATATCTTAGCTTTCTTATCAATGGATGGTAACCTCGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGGTCCCTTACTGGTGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCAACATCGAAGATTTTTGGCTCCTTGAGCAGAGAAAATGATGTACTCATCATGGAAGAAGACGAGTCTGATGCAAAGGATGTTTCTGAAATGAAATTGGCAAATGATGGTAAAATTCCTGAATGGGCACAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTTTAGATAAGAATCCGCCAGATTGGGCGAGGGCAATACTGGAACACTCAATTAGTAAGGCCGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGAATGATGTAACTCAAGGAGTGCAGCCGAATACCAACAAGGAAAGGAAAAAGAAGATTATTATATCTATTTCTGACATTATTTTGAAGCAATGCCGCATTGTATTACGCCGTGCAGCTGCTGCAGATGATTCAAAAGTTTTTTGCAATTTGTTGGGAAGAAAATTAGTAAATTCTTCTGATAACGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGATTTCCGAACTATTGATCTAAGATTGGCTTCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGCGAGCTGTGGAGCAATGTTCGTGTTGCTTTTGGGGATCAACCGGATTTAGTTGAACTTGCGGAAAAATTATCCCAGAATTTTGAACTTTTATACGATGATGAGGTTGTCACCTATGTCCAAAAGTTTGCAGAGTATGCTAAAGTGGGATGCTTAAGTGCAGAAATGAAAAAAGAAGTTGATGTTTTCATTGCATCAACAAGTGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCGTTGATAGGGACGATGACAGTGTTCTTCTATGTGATACTTGTGATGCTGAGTATCATAAATATTGCTTGAATCCTCCACTTGCAAGGATCCCCGAAGGAAATTGGTACTGTCCATCTTGTATTGGTGGTAAACATGCAACACAAGATGTCACGGAACCTGCTAAGATTACTGGAAAACGTAGTAGTAAAAAATTCCAGGGAGAAGTTATCTGTCTTTATTTGGAAGCACTAACTCATTTATCGGCTGTTATGGAAGAAAAAGAATATTGGGAGTACAGTGTGGGAGAGAGAATGCTCCTCCTCAAGTTTTTATGTGGCGAGTTGCTCAGCTCTTCTCTGATACGACAGCATCTTGAGCAATGTGCAGAGTCTTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTGGAGTGGAAAAACCTGAAAATTAAGGAAGATGTTTTATCCACAAAAGCTGCAAAATTTGATTTGTTGTCACAAAGTACCAATGGAGAAGTTGGTCTTAAGGACGGATTCACATCTTTGTTCTCAAATACTAGTAAATGTCTTTTTAAGCCACATAGTGCAACCACCAATCCTAATGGTCCTGGGGTATTTGTTGATAGTCTACCTTCAGAAGAGATTCCTAAAGAGAAGTCTAGGTTCAATAGTGTTGATAAAAGCATATCCGTGACACATTCAGATTCTGATAGCCAAAACATGAATTCCATAGAAGGACAACTTAGGACTGTTCCTGTGGTTGTAGAGTCTCCATGTACAGATAAATCCCCCAAGTATTTTCCATCCCCAAATCATATGGCTCAAGGAATAAATGGTTACAGTGGAGCAACTCATATTCAGGGTAGCCACCAGAAATGTGAGGTAAGGGATGTATTTACTTCTGCTTCCTGCCAGCAGGGACAATGTGTGCCTGTTGAAGTTTCCCAGAATGCCGTGAATGAGTTGGAGCCATACCACCTCGAGCTCAATGCCGTCAAGCATAATATTTTGCTACTGCAGGACTCTATAACTAGCATAGGATCACAGCTGTCAAAGGTCCCTGTTCGTCGGGAATTTTTAGGAATTGATTCCATTGGTCGACTATACTGGGCTTTGGGTACGCCTAGTGAACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATAGAAAAGGATTGTCAGTTGGCAAAAATTTTGTCGACAAGTTTTCCGCTCTGCAGCATTGGGCACTATCTGAGAAGGATAACTATAAGATGTTAGGGCTGATCAAGGACTGCTCTCCTTTGAATTCGCAACCACTTAAAGCTTCAGGCAATTGTTCACCGTGGATTGCTTATGAAACTGATTCAGAAATCGAAGAGCTGTTGGGTTGGTTAACAGATAATGACCCTAGAGAAAAAGAGTTGAAAGATTCCATTATGCTGGCGCAAAAACATAAGCTTCAAGAGTTTATTAATGCAAACACTGAATGTCAGGTTGATGACCAAGTGCCAAGAAATACACCATCTAATTCTCTTGTTACAAAGGCCACTTCCTTGCTGGAAAAGAACAGAACTACTGATGAAAAGTTGTGTAGGTGTGAATGCCTAGAGCCCATATGGCCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTGACTGATGATGAATTTGAGCTACACAATGATGGCAAATGTAATGCAGGACTTCTGGCCTTGGAGAAGAATAAAGATAAAAATGGATCTTCTAAAGGAAGAGGGAATTTGAAATGTGATGCCTCACATGAAAAGTCCCGAGCTTATGCAGAAACAGCTGGAACCTCAATCAATAAATGTTCCAAGCTAAGTTTGAATTTGATTAAATTTTCAAATGAAGGTTCCTCTTGCCCATTTAATTTTGAAGATATATGCTCAAAGTTTGTGACAGATGATTCCAACAAGAAGCTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGTCCCATCTTTTGTTTCTTCCATATCTCCTCTTGTTAGTGATTTTACGCTATTCTTATCCCTAAAGGGCGATGACATTGTTGGTGGTGCCTCTAAAGCTTTAGAAAGCCGGGTTTCTCAAGAAAACACTGATGGTGCTGGCATATGCCATGACAATAAATCAGGAAAATCCACTCAGAGTTTAGCTGCAAATGAAAGCAATGAAACAGGAAAATCGAGTAAATTAGGAGAACAAAGAGATGGAAAGTTCTCTTTTTGTAATCGGGCTTCCGATATGGGAGTCTATAGCTGCTGTGTGGTTCCTTCGTCGTCCTTGAGACCACTAGTTGGTAAAGTTTCTCATATCTTGAGGCAACTAAAGATTAATCTACTTGATATGGATGCTGCGCTTCCAGAAGTTGCTCTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCTTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGCGATGATTCAGGCAACAATTGCACTGGAGGATATGATTAAGACGGAGTTCTTAAGGATTGACTGGTGGTACTGGTCAGCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTCGCTCTTCGGATATACTCTCTTGATTCAGCCATTATGTATGAGAAAATGCCCAATTCAAGTTTAACTGACAGCTCTGATCCTCCTGCCATAGCAGAACAGAAACTGGTGATCACCGTGGATGCAGATAAAACCAAGTCAAGCCGGAAGTCCAACAGGAAAAGAAAGGAATCGGATGGTTAA | 6072 | 0.4117 | MLLRLVMLMVKSCMMRVTYSTFYNGSAFGLQRASGVMTHAVRVGFEDILNHTQAMARSFEEVPSQTQSPNESILLALRDFISERHGVLEEGWRVELRQSMISPDLYAVYCAPDGKIFDSVYEVANYLGLPSGYNSMESEIKNEMSLSLGGPHISRKRKSSRTLTANGYAEKQGTMINSNYKDCSSDGFIMECANAQGTIPKASEIGRKENSHTDPDQSADGLPLQFKDFYVLSLGKVDGRPSYYDVNLTFPVGYRSSWHDKITGSLFTCEVLDGGDSGPLFRIKRCSCSKFPIPDGSTILSMQSHCQFVSETNECRRETNDSMDFDGDESIQMILLEPCAPTENDILSCVASCSNETYASEGLRPVAGSVRDNTENSFDDNMDFGDEIGDILVEEQSPFSAWKLISQKLVSACKDICKEKGTLKLYCKHVVSEMGLHKWDLRNGKIDTHFPSLDKFCGYPGFVGIPDTLYADSDLTGLYELLGKWLEQDRFGLDVEFVQEVLEQLPGVQDSLQYELLSSRTNSSSLPTVENGFLVVESKGQSKYQDEAAAVQGLYRRPKKARLTESFVKEDQCPPPGKPLCSRAPTELIGDIFEVWEHLDRFHEILDLKEPLLLEELEKELINPWFDELEFPEKLERGMGRNQVLCSQGGNDDYRLVCEAGPSGSTESSFIQVETEAMKEEAQVKLASFTYVRCFGIALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRGRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATSKIFGSLSRENDVLIMEEDESDAKDVSEMKLANDGKIPEWAQVLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARAILEHSISKAVYKGNASGPTKKAVLSVLNDVTQGVQPNTNKERKKKIIISISDIILKQCRIVLRRAAAADDSKVFCNLLGRKLVNSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWSNVRVAFGDQPDLVELAEKLSQNFELLYDDEVVTYVQKFAEYAKVGCLSAEMKKEVDVFIASTSEIPKAPWDEGVCKVCGVDRDDDSVLLCDTCDAEYHKYCLNPPLARIPEGNWYCPSCIGGKHATQDVTEPAKITGKRSSKKFQGEVICLYLEALTHLSAVMEEKEYWEYSVGERMLLLKFLCGELLSSSLIRQHLEQCAESSVELHQKLRALSVEWKNLKIKEDVLSTKAAKFDLLSQSTNGEVGLKDGFTSLFSNTSKCLFKPHSATTNPNGPGVFVDSLPSEEIPKEKSRFNSVDKSISVTHSDSDSQNMNSIEGQLRTVPVVVESPCTDKSPKYFPSPNHMAQGINGYSGATHIQGSHQKCEVRDVFTSASCQQGQCVPVEVSQNAVNELEPYHLELNAVKHNILLLQDSITSIGSQLSKVPVRREFLGIDSIGRLYWALGTPSERSRIVVDASAVLQHRKGLSVGKNFVDKFSALQHWALSEKDNYKMLGLIKDCSPLNSQPLKASGNCSPWIAYETDSEIEELLGWLTDNDPREKELKDSIMLAQKHKLQEFINANTECQVDDQVPRNTPSNSLVTKATSLLEKNRTTDEKLCRCECLEPIWPSRKHCLYCHKTFLTDDEFELHNDGKCNAGLLALEKNKDKNGSSKGRGNLKCDASHEKSRAYAETAGTSINKCSKLSLNLIKFSNEGSSCPFNFEDICSKFVTDDSNKKLVREIGLIGSDGVPSFVSSISPLVSDFTLFLSLKGDDIVGGASKALESRVSQENTDGAGICHDNKSGKSTQSLAANESNETGKSSKLGEQRDGKFSFCNRASDMGVYSCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPEVALRPSKAQLDRRQAWRAFVKSAETIYAMIQATIALEDMIKTEFLRIDWWYWSAFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSLTDSSDPPAIAEQKLVITVDADKTKSSRKSNRKRKESDG | 2023 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g04537 | 2023 | PANTHER | OS02G0192300 PROTEIN | 22 | 2019 | - | - | |
| Vivi2g04537 | 2023 | ProSitePatterns | Zinc finger PHD-type signature. | 1110 | 1154 | IPR019786 | - | |
| Vivi2g04537 | 2023 | ProSiteProfiles | Zinc finger PHD-type profile. | 1107 | 1157 | IPR019787 | - | |
| Vivi2g04537 | 2023 | MobiDBLite | consensus disorder prediction | 1808 | 1842 | - | - | |
| Vivi2g04537 | 2023 | SUPERFAMILY | FYVE/PHD zinc finger | 1094 | 1159 | IPR011011 | - | |
| Vivi2g04537 | 2023 | CDD | Bromodomain | 958 | 1059 | - | - | |
| Vivi2g04537 | 2023 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1065 | 1168 | IPR013083 | - | |
| Vivi2g04537 | 2023 | ProSiteProfiles | Bromodomain profile. | 1000 | 1048 | IPR001487 | GO:0005515 | |
| Vivi2g04537 | 2023 | MobiDBLite | consensus disorder prediction | 1326 | 1349 | - | - | |
| Vivi2g04537 | 2023 | SUPERFAMILY | Bromodomain | 945 | 1063 | IPR036427 | GO:0005515 | |
| Vivi2g04537 | 2023 | ProSiteProfiles | FYR domain FYRN motif profile. | 221 | 274 | IPR003888 | GO:0005634 | |
| Vivi2g04537 | 2023 | Pfam | PHD-finger | 1109 | 1155 | IPR019787 | - | |
| Vivi2g04537 | 2023 | Gene3D | - | 936 | 1064 | IPR036427 | GO:0005515 | |
| Vivi2g04537 | 2023 | Pfam | Bromodomain | 998 | 1053 | IPR001487 | GO:0005515 | |
| Vivi2g04537 | 2023 | MobiDBLite | consensus disorder prediction | 1808 | 1836 | - | - | |
| Vivi2g04537 | 2023 | MobiDBLite | consensus disorder prediction | 723 | 742 | - | - | |
| Vivi2g04537 | 2023 | SMART | PHD_3 | 1109 | 1155 | IPR001965 | - | |
| Vivi2g04537 | 2023 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 1189 | 1233 | IPR028942 | - | |
| Vivi2g04537 | 2023 | CDD | PHD1_Lid2p_like | 1109 | 1154 | - | - | |
| Vivi2g04537 | 2023 | MobiDBLite | consensus disorder prediction | 1333 | 1349 | - | - | |
| Vivi2g04537 | 2023 | Pfam | Methyl-CpG binding domain | 79 | 130 | IPR001739 | GO:0003677 | |
| Vivi2g04537 | 2023 | MobiDBLite | consensus disorder prediction | 728 | 742 | - | - | |
| Vivi2g04537 | 2023 | Gene3D | - | 222 | 331 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g04537 | Vivi-Chr2 | 160577162 | 160590209 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi2g04537 | 4 | 2023 | C2H2 Transcription Factor Family | AT3G01460 | 44.834 | 0.0 | 1564 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Vivi2g04537 | Bromodomain | 1.4e-05 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g04537 | K22768 | - | gmx:100820223 | 2791.14 |