Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04536 ATGATCATGGAACTCACCGAATCCTCCGCGGCTAACCTCAACAACCTCCCGCTTCCTCCGCCGCCGCAACCGCCGCACAACAACCTCCAAGATACTCGTTCAATTCTATGCATCGACCTAAACGAGATCCCTTCTCCTTCTTCCTCATTCCCCGAAACCCTACCTGACTTAACCATCGACATCGTCCGTACCTACCACGAAAATCCAGCGCCTCCTCCTGGTGGTCCTGCAGCTCTCCCCGGTGGTTCCACTTCTTGCGCCGTCTGTGCTAAATCCGGAGGTGGTAATTGTTTAGTGTGTGACGGCTGTGAGCGGAGTTTTCACTTGGCTTGCGCCGGGATTCGAGGTGGAGGTGGTCGGCAGGTTGCTGCGAGTATTGGAGAGTGGGTTTGCGGTGAGTGTTTGGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCTAAGCAGCTTCTTGATATCAATGCTTCTCCGCCTAGTGATGTTGATGGTGAAGAGTTGCATGATGCGAGAAAGCACACGATGGGTGATAAATCTTTTGGTACCAATCAATTTGGTGATCCAGTGACATATTCAACCTTCTACAACGGGAGTGCGTTTGGCTTGCAAAGGGCATCTGGAGTTATGACACATGCTGTTAGAGTGGGTTTTGAAGATATATTAAATCACACCCAAGCAATGGCTAGAAGCTTTGAGGAAGTACCATCTCAGACTCAGAGTCCAAATGAGTCAATTTTGCTGGCTCTTAGAGATTTTATATCTGAAAGGCATGGTGTACTGGAGGAAGGTTGGCGAGTGGAACTTAGACAATCAATGATCAGCCCTGACCTGTATGCAGTTTATTGTGCCCCTGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCTGGCTACAATTCCATGGAATCTGAAATAAAGAATGAAATGTCTCTTTCTTTAGGTGGGCCTCACATATCCAGAAAACGAAAGTCTTCTAGAACTCTGACAGCCAATGGTTATGCAGAAAAGCAGGGAACCATGATCAATAGTAATTATAAGGATTGCTCTTCTGATGGTTTCATTATGGAATGTGCTAATGCTCAGGGGACTATCCCAAAAGCCTCTGAGATTGGAAGAAAAGAGAACAGTCACACCGACCCTGATCAATCCGCTGATGGACTTCCTCTGCAGTTTAAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTACCTTTCCTGTGGGTTATAGATCTTCCTGGCATGACAAGATTACTGGCTCTCTTTTTACGTGCGAAGTTTTGGATGGTGGTGATTCTGGGCCTTTATTTAGGATTAAAAGGTGTTCATGTTCAAAGTTTCCTATTCCAGATGGGTCAACCATCCTTTCAATGCAAAGTCATTGTCAATTTGTAAGCGAAACCAATGAATGTCGGAGAGAGACTAATGATAGTATGGATTTCGACGGTGACGAGAGTATCCAAATGATCCTTTTAGAACCCTGTGCCCCAACAGAAAATGACATCTTAAGTTGTGTTGCCAGTTGCTCAAATGAAACATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCGGTTCGAGATAATACTGAAAATTCATTTGATGATAATATGGATTTTGGTGATGAAATTGGTGATATTTTGGTTGAAGAGCAGTCCCCATTCTCAGCATGGAAACTTATTTCTCAAAAGTTAGTCAGTGCTTGCAAGGATATCTGCAAGGAGAAAGGAACTCTTAAATTATATTGTAAACATGTTGTAAGTGAAATGGGCTTACATAAATGGGATTTAAGGAATGGAAAAATTGATACCCACTTCCCTTCGTTGGATAAATTTTGTGGTTATCCTGGGTTTGTCGGCATTCCAGATACACTTTATGCAGACAGTGATCTGACTGGTCTCTATGAGCTGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGGTTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGCGTGCAGGATTCTTTGCAATATGAACTTTTGAGTAGTAGAACTAATAGCTCTTCATTACCAACAGTGGAGAATGGTTTCCTAGTGGTTGAATCTAAAGGTCAATCAAAATATCAAGATGAAGCAGCAGCTGTTCAAGGTTTATATAGAAGGCCTAAGAAGGCAAGATTGACTGAAAGTTTTGTTAAGGAAGATCAATGTCCACCTCCCGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATTGGTGACATTTTTGAGGTTTGGGAGCATTTAGATAGATTTCATGAAATTCTAGACCTTAAAGAACCATTGTTATTGGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGAGTTCCCTGAGAAGTTGGAGAGGGGAATGGGTAGAAATCAAGTTTTATGTTCACAAGGGGGTAATGATGATTACCGACTAGTATGTGAAGCTGGTCCATCAGGTTCCACAGAAAGTTCTTTTATTCAAGTGGAAACAGAAGCTATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCCTTCACCTATGTCAGATGCTTTGGTATAGCATTGACCAAGGCTCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCTGCTCTGGTGGATCCAAATTCTGAACCCGGAGAGACTCGGGGTAGACGAGGAAGAAGGAAAGATATAGATAGTGCAGTTCCTGCCAAACGAACTAAAGTCAATATGCTTCCTATTAATGAATTGACATGGCCAGAACTAGCTCGTAGATATATCTTAGCTTTCTTATCAATGGATGGTAACCTCGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGGTCCCTTACTGGTGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCAACATCGAAGATTTTTGGCTCCTTGAGCAGAGAAAATGATGTACTCATCATGGAAGAAGACGAGTCTGATGCAAAGGATGTTTCTGAAATGAAATTGGCAAATGATGGTAAAATTCCTGAATGGGCACAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTTTAGATAAGAATCCGCCAGATTGGGCGAGGGCAATACTGGAACACTCAATTAGTAAGGCCGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGAATGATGTAACTCAAGGAGTGCAGCCGAATACCAACAAGGAAAGGAAAAAGAAGATTATTATATCTATTTCTGACATTATTTTGAAGCAATGCCGCATTGTATTACGCCGTGCAGCTGCTGCAGATGATTCAAAAGTTTTTTGCAATTTGTTGGGAAGAAAATTAGTAAATTCTTCTGATAACGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGATTTCCGAACTATTGATCTAAGATTGGCTTCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGCGAGCTGTGGAGCAATGTTCGTGTTGCTTTTGGGGATCAACCGGATTTAGTTGAACTTGCGGAAAAATTATCCCAGAATTTTGAACTTTTATACGATGATGAGGTTGTCACCTATGTCCAAAAGTTTGCAGAGTATGCTAAAGTGGGATGCTTAAGTGCAGAAATGAAAAAAGAAGTTGATGTTTTCATTGCATCAACAAGTGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCGTTGATAGGGACGATGACAGTGTTCTTCTATGTGATACTTGTGATGCTGAGTATCATAAATATTGCTTGAATCCTCCACTTGCAAGGATCCCCGAAGGAAATTGGTACTGTCCATCTTGTATTGGTGGTAAACATGCAACACAAGATGTCACGGAACCTGCTAAGATTACTGGAAAACGTAGTAGTAAAAAATTCCAGGGAGAAGTTATCTGTCTTTATTTGGAAGCACTAACTCATTTATCGGCTGTTATGGAAGAAAAAGAATATTGGGAGTACAGTGTGGGAGAGAGAATGCTCCTCCTCAAGTTTTTATGTGGCGAGTTGCTCAGCTCTTCTCTGATACGACAGCATCTTGAGCAATGTGCAGAGTCTTCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTGGAGTGGAAAAACCTGAAAATTAAGGAAGATGTTTTATCCACAAAAGCTGCAAAATTTGATTTGTTGTCACAAAGTACCAATGGAGAAGTTGGTCTTAAGGACGGATTCACATCTTTGTTCTCAAATACTAGTAAATGTCTTTTTAAGCCACATAGTGCAACCACCAATCCTAATGGTCCTGGGGTATTTGTTGATAGTCTACCTTCAGAAGAGATTCCTAAAGAGAAGTCTAGGTTCAATAGTGTTGATAAAAGCATATCCGTGACACATTCAGATTCTGATAGCCAAAACATGAATTCCATAGAAGGACAACTTAGGACTGTTCCTGTGGTTGTAGAGTCTCCATGTACAGATAAATCCCCCAAGTATTTTCCATCCCCAAATCATATGGCTCAAGGAATAAATGGTTACAGTGGAGCAACTCATATTCAGGGTAGCCACCAGAAATGTGAGGTAAGGGATGTATTTACTTCTGCTTCCTGCCAGCAGGGACAATGTGTGCCTGTTGAAGTTTCCCAGAATGCCGTGAATGAGTTGGAGCCATACCACCTCGAGCTCAATGCCGTCAAGCATAATATTTTGCTACTGCAGGACTCTATAACTAGCATAGGATCACAGCTGTCAAAGGTCCCTGTTCGTCGGGAATTTTTAGGAATTGATTCCATTGGTCGACTATACTGGGCTTTGGGTACGCCTAGTGAACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATAGAAAAGGATTGTCAGTTGGCAAAAATTTTGTCGACAAGTTTTCCGCTCTGCAGCATTGGGCACTATCTGAGAAGGATAACTATAAGATGTTAGGGCTGATCAAGGACTGCTCTCCTTTGAATTCGCAACCACTTAAAGCTTCAGGCAATTGTTCACCGTGGATTGCTTATGAAACTGATTCAGAAATCGAAGAGCTGTTGGGTTGGTTAACAGATAATGACCCTAGAGAAAAAGAGTTGAAAGATTCCATTATGCTGGCGCAAAAACATAAGCTTCAAGAGTTTATTAATGCAAACACTGAATGTCAGGTTGATGACCAAGTGCCAAGAAATACACCATCTAATTCTCTTGTTACAAAGGCCACTTCCTTGCTGGAAAAGAACAGAACTACTGATGAAAAGTTGTGTAGGTGTGAATGCCTAGAGCCCATATGGCCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTGACTGATGATGAATTTGAGCTACACAATGATGGCAAATGTAATGCAGGACTTCTGGCCTTGGAGAAGAATAAAGATAAAAATGGATCTTCTAAAGGAAGAGGGAATTTGAAATGTGATGCCTCACATGAAAAGTCCCGAGCTTATGCAGAAACAGCTGGAACCTCAATCAATAAATGTTCCAAGCTAAGTTTGAATTTGATTAAATTTTCAAATGAAGGTTCCTCTTGCCCATTTAATTTTGAAGATATATGCTCAAAGTTTGTGACAGATGATTCCAACAAGAAGCTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGTCCCATCTTTTGTTTCTTCCATATCTCCTCTTGTTAGTGATTTTACGCTATTCTTATCCCTAAAGGGCGATGACATTGTTGGTGGTGCCTCTAAAGCTTTAGAAAGCCGGGTTTCTCAAGAAAACACTGATGGTGCTGGCATATGCCATGACAATAAATCAGGAAAATCCACTCAGAGTTTAGCTGCAAATGAAAGCAATGAAACAGGAAAATCGAGTAAATTAGGAGAACAAAGAGATGGAAAGTTCTCTTTTTGTAATCGGGCTTCCGATATGGGAGTCTATAGCTGCTGTGTGGTTCCTTCGTCGTCCTTGAGACCACTAGTTGGTAAAGTTTCTCATATCTTGAGGCAACTAAAGATTAATCTACTTGATATGGATGCTGCGCTTCCAGAAGTTGCTCTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCTTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGCGATGATTCAGGCAACAATTGCACTGGAGGATATGATTAAGACGGAGTTCTTAAGGATTGACTGGTGGTACTGGTCAGCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTCGCTCTTCGGATATACTCTCTTGATTCAGCCATTATGTATGAGAAAATGCCCAATTCAAGTTTAACTGACAGCTCTGATCCTCCTGCCATAGCAGAACAGAAACTGGTGATCACCGTGGATGCAGATAAAACCAAGTCAAGCCGGAAGTCCAACAGGAAAAGAAAGGAATCGGATGGTTAA 6594 0.4213 MIMELTESSAANLNNLPLPPPPQPPHNNLQDTRSILCIDLNEIPSPSSSFPETLPDLTIDIVRTYHENPAPPPGGPAALPGGSTSCAVCAKSGGGNCLVCDGCERSFHLACAGIRGGGGRQVAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKHTMGDKSFGTNQFGDPVTYSTFYNGSAFGLQRASGVMTHAVRVGFEDILNHTQAMARSFEEVPSQTQSPNESILLALRDFISERHGVLEEGWRVELRQSMISPDLYAVYCAPDGKIFDSVYEVANYLGLPSGYNSMESEIKNEMSLSLGGPHISRKRKSSRTLTANGYAEKQGTMINSNYKDCSSDGFIMECANAQGTIPKASEIGRKENSHTDPDQSADGLPLQFKDFYVLSLGKVDGRPSYYDVNLTFPVGYRSSWHDKITGSLFTCEVLDGGDSGPLFRIKRCSCSKFPIPDGSTILSMQSHCQFVSETNECRRETNDSMDFDGDESIQMILLEPCAPTENDILSCVASCSNETYASEGLRPVAGSVRDNTENSFDDNMDFGDEIGDILVEEQSPFSAWKLISQKLVSACKDICKEKGTLKLYCKHVVSEMGLHKWDLRNGKIDTHFPSLDKFCGYPGFVGIPDTLYADSDLTGLYELLGKWLEQDRFGLDVEFVQEVLEQLPGVQDSLQYELLSSRTNSSSLPTVENGFLVVESKGQSKYQDEAAAVQGLYRRPKKARLTESFVKEDQCPPPGKPLCSRAPTELIGDIFEVWEHLDRFHEILDLKEPLLLEELEKELINPWFDELEFPEKLERGMGRNQVLCSQGGNDDYRLVCEAGPSGSTESSFIQVETEAMKEEAQVKLASFTYVRCFGIALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRGRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATSKIFGSLSRENDVLIMEEDESDAKDVSEMKLANDGKIPEWAQVLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARAILEHSISKAVYKGNASGPTKKAVLSVLNDVTQGVQPNTNKERKKKIIISISDIILKQCRIVLRRAAAADDSKVFCNLLGRKLVNSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWSNVRVAFGDQPDLVELAEKLSQNFELLYDDEVVTYVQKFAEYAKVGCLSAEMKKEVDVFIASTSEIPKAPWDEGVCKVCGVDRDDDSVLLCDTCDAEYHKYCLNPPLARIPEGNWYCPSCIGGKHATQDVTEPAKITGKRSSKKFQGEVICLYLEALTHLSAVMEEKEYWEYSVGERMLLLKFLCGELLSSSLIRQHLEQCAESSVELHQKLRALSVEWKNLKIKEDVLSTKAAKFDLLSQSTNGEVGLKDGFTSLFSNTSKCLFKPHSATTNPNGPGVFVDSLPSEEIPKEKSRFNSVDKSISVTHSDSDSQNMNSIEGQLRTVPVVVESPCTDKSPKYFPSPNHMAQGINGYSGATHIQGSHQKCEVRDVFTSASCQQGQCVPVEVSQNAVNELEPYHLELNAVKHNILLLQDSITSIGSQLSKVPVRREFLGIDSIGRLYWALGTPSERSRIVVDASAVLQHRKGLSVGKNFVDKFSALQHWALSEKDNYKMLGLIKDCSPLNSQPLKASGNCSPWIAYETDSEIEELLGWLTDNDPREKELKDSIMLAQKHKLQEFINANTECQVDDQVPRNTPSNSLVTKATSLLEKNRTTDEKLCRCECLEPIWPSRKHCLYCHKTFLTDDEFELHNDGKCNAGLLALEKNKDKNGSSKGRGNLKCDASHEKSRAYAETAGTSINKCSKLSLNLIKFSNEGSSCPFNFEDICSKFVTDDSNKKLVREIGLIGSDGVPSFVSSISPLVSDFTLFLSLKGDDIVGGASKALESRVSQENTDGAGICHDNKSGKSTQSLAANESNETGKSSKLGEQRDGKFSFCNRASDMGVYSCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPEVALRPSKAQLDRRQAWRAFVKSAETIYAMIQATIALEDMIKTEFLRIDWWYWSAFSAAAKSSTLPSLALRIYSLDSAIMYEKMPNSSLTDSSDPPAIAEQKLVITVDADKTKSSRKSNRKRKESDG 2197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04536 2197 MobiDBLite consensus disorder prediction 1500 1523 - -
Vivi2g04536 2197 CDD PHD1_Lid2p_like 1283 1328 - -
Vivi2g04536 2197 ProSiteProfiles Bromodomain profile. 1174 1222 IPR001487 GO:0005515
Vivi2g04536 2197 Pfam Bromodomain 1172 1227 IPR001487 GO:0005515
Vivi2g04536 2197 SMART PHD_3 1283 1329 IPR001965 -
Vivi2g04536 2197 SMART PHD_3 85 135 IPR001965 -
Vivi2g04536 2197 ProSiteProfiles Zinc finger PHD-type profile. 1281 1331 IPR019787 -
Vivi2g04536 2197 MobiDBLite consensus disorder prediction 1982 2010 - -
Vivi2g04536 2197 CDD Bromodomain 1132 1233 - -
Vivi2g04536 2197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 143 IPR013083 -
Vivi2g04536 2197 Gene3D - 396 505 - -
Vivi2g04536 2197 ProSitePatterns Zinc finger PHD-type signature. 1284 1328 IPR019786 -
Vivi2g04536 2197 ProSiteProfiles Zinc finger PHD-type profile. 83 137 IPR019787 -
Vivi2g04536 2197 MobiDBLite consensus disorder prediction 1982 2016 - -
Vivi2g04536 2197 Pfam Methyl-CpG binding domain 253 304 IPR001739 GO:0003677
Vivi2g04536 2197 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1363 1407 IPR028942 -
Vivi2g04536 2197 SUPERFAMILY FYVE/PHD zinc finger 1268 1333 IPR011011 -
Vivi2g04536 2197 MobiDBLite consensus disorder prediction 902 916 - -
Vivi2g04536 2197 ProSitePatterns Zinc finger PHD-type signature. 86 134 IPR019786 -
Vivi2g04536 2197 MobiDBLite consensus disorder prediction 897 916 - -
Vivi2g04536 2197 Gene3D - 1110 1238 IPR036427 GO:0005515
Vivi2g04536 2197 SUPERFAMILY Bromodomain 1119 1237 IPR036427 GO:0005515
Vivi2g04536 2197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1239 1342 IPR013083 -
Vivi2g04536 2197 SUPERFAMILY FYVE/PHD zinc finger 69 135 IPR011011 -
Vivi2g04536 2197 ProSiteProfiles FYR domain FYRN motif profile. 395 448 IPR003888 GO:0005634
Vivi2g04536 2197 MobiDBLite consensus disorder prediction 1507 1523 - -
Vivi2g04536 2197 PANTHER OS02G0192300 PROTEIN 24 2193 - -
Vivi2g04536 2197 Pfam PHD-finger 86 135 IPR019787 -
Vivi2g04536 2197 Pfam PHD-finger 1283 1329 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04536 Vivi-Chr2 160577162 160590778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04536 30 2197 C2H2 Transcription Factor Family AT3G01460 44.593 0.0 1678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi2g04536 Bromodomain 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04536 K22768 - gmx:100820223 3002.62