Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04470 ATGATTTCCATCTCTCTACTTCACCTTTCACTCACACACACTCTTTCTCTCTATCTTCCTCTCTTATATTCTCACTCATATATACATGCAAAAATAATGGACAAAAAACCCTGCAACTCATCTCAAGATCCTGAAGTGAGAAAAGGACCATGGACCATGGAAGAAGACTTGATTTTGATCAATTATATTGCAAATCATGGAGAAGGTGTTTGGAATTCCTTGGCCAAAGCTGCTGGTCTTAAACGTACAGGAAAGAGTTGTAGGCTTCGATGGTTAAACTACCTTCGTCCGGATGTTAGAAGAGGGAATATTACACCTGAGGAGCAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACCGACAATGAGATTAAGAATTTTTGGAGGACTAGGATACAAAAGCACATTAAGCAAGTTGATAACCCTAATCAACAAAATTTTCAGCAAAAAATGAGTTTAGAGATAAATGATCATCACCACCATCATCATCAACAACCAAGTAGTAGCCAAGTTTCTACTTTGGTAGAGCCAATGGAAACTTATTCTCCAACTTCATATCAAGGAACTTTGGAGCCATTTCCAACTCATTTTCCAACTATCAATGATCATCATCATAACACAAATGGTTGTGCCAATGACAACAATACCAACACTTATTGGAGCGTGGAGGATTTCTGGTCAATGCAATTACTCAATGGAGATTAA 747 0.3815 MISISLLHLSLTHTLSLYLPLLYSHSYIHAKIMDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDNPNQQNFQQKMSLEINDHHHHHHQQPSSSQVSTLVEPMETYSPTSYQGTLEPFPTHFPTINDHHHNTNGCANDNNTNTYWSVEDFWSMQLLNGD 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04470 248 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 42 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi2g04470 248 Pfam Myb-like DNA-binding domain 101 144 IPR001005 -
Vivi2g04470 248 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Vivi2g04470 248 FunFam Myb transcription factor 48 100 - -
Vivi2g04470 248 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Vivi2g04470 248 CDD SANT 105 144 IPR001005 -
Vivi2g04470 248 CDD SANT 50 95 IPR001005 -
Vivi2g04470 248 SUPERFAMILY Homeodomain-like 45 142 IPR009057 -
Vivi2g04470 248 Gene3D - 105 184 - -
Vivi2g04470 248 Gene3D - 48 100 - -
Vivi2g04470 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 150 IPR017930 -
Vivi2g04470 248 FunFam Myb-related protein 305 105 184 - -
Vivi2g04470 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 95 IPR017930 -
Vivi2g04470 248 SMART sant 100 148 IPR001005 -
Vivi2g04470 248 SMART sant 47 97 IPR001005 -
Vivi2g04470 248 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04470 Vivi-Chr2 159432910 159437829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04470 28 248 MYB Transcription Factor Family AT3G01530 53.744 5.58e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g04470 Myb_DNA-binding 9.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04470 K09422 - gmx:778048 333.954