Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04464 ATGGCTGCTACAGCAACTGCCGTGGGTCCTAGGTATGCGCCAGCTGATCCCACCCTTCCTAAACCATGGAAGGGCCTTGTGGATGGCAAGACAGGGTATCTTTACTTTTGGAATCCTGAGACAAATGTCACCCAGTATGAAAGGCCTTTGAGCTCAGCTGCCTCACCAAAGCCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCGTCTCAAGGGCGTGGTCGCAGTCCTGATTTCAGTGATAGATATGATAGGAATGGAAATGGCGTGTCAGATGAAAATGGATCTCGGAGCCATCAGAGTTCCAAGGGTGGCACTTTTAGTTCTCATAATGATGTTGCAAATGGAACACATGTTGCTGGAAATGTTAGTTCTATCAAAGGTCACATAGCATCAGATACAGGACCTGCATTAACTCCAGAGGCTTATAGACGTCGTCACGAGATCACTGTTACTGGAGATAATGTGCCTCCACCTGTTACATCATTTGCGACTTCTGGCTTTCCATCTGAGATTCTCAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCGTGGCCCATTGCTCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTTAAGCGCACTAATAATAATGCCAAAATGGGGCCCACTATATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAAATTCAAGACGAAGCTGTAAAGTTCAGTAAAACATCAAGAATCGCCTGCACTTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACACCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTACATCAGGTCTCTTACCTAGTCCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAACGGGGTGCCCGCTCGCAGGCAAACTCTTATGTTTACAGCAACTTGGCCTAAAGAGGTTAGAAGAATTGCAGCTGACCTGCTTGTCAATCCTGTCCAGGTGAACATTGGCAACGTAGATGAGCTTGTAGCTAACAAGTCCATCACTCAGCATATTGAAGTTTTGGCACATATGGAGAAACAGCGACGACTGGAAAGTATTTTGCGTTCACAGGATCAAGGATCAAAGATAATTATTTTTTGCTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCTGTACTTGTAGCCACAGATGTTGCTGCTCGTGGATTGGACGTCAAAGACATTAGAGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATCGGAAGAACTGGGAGGGCTGGAGCCACCGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTAGAGGGTGCAAACCAGAAAGTCCCTCCAGAACTTCGTGAATTGTCATCCAGGGGTGGCGGTGGGTTTGGCAGATCCAGACGATATAGTTCTGGTGGTCGTGGCGATTCTGGATTTGGCGCGAAGAGTTATGACTCTGGGTATGGTGGAAGGGGTAATGATTCAGGATATGGTGGAAGGGGTAGTGATTCAAGTTATGGAGGAAGAGGTGGATACGGGTCTTCTGCTGCTTTTGGCAGAGGTGGAGGCCGAGGATTTGACTATGACTCACAGAGGAATGAACGAGACCGAAGCCCCGATAGGGGATCTAGCTGGAGTGATCGCTTCAAAACTCGGGAGCGCAGCCGCAGTCCCGTCAAAGCTACAGCATCTGCAGCATCTCAATATACCCCGGGAGTCAGCTTTCATCAAGCAATGATGGAACGCAATGGAGGAGGCAGTGATCGCAACAAGAGCTTTAACCGGGAGAGAAGCCGCAGTCATAGTCCTTATAGACAGGACAAGGGAAAAAGTTCACGATCCCCTCCTGGCGGTGGTCGGACCAACAGTAGTCCTCAGAAAGGGTGGGGAGGATCTTCAGGTGTTGGAAGAAATGGTGGTTCTCATCCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGAAGAAGAAGGAATGATAGGTCATGATGAATCTTCTATATATCGAAGTGCAAATTAG 2274 0.4679 MAATATAVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPLSSAASPKPSSVPSSSVQVQQSSQGRGRSPDFSDRYDRNGNGVSDENGSRSHQSSKGGTFSSHNDVANGTHVAGNVSSIKGHIASDTGPALTPEAYRRRHEITVTGDNVPPPVTSFATSGFPSEILKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTILVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPPELRELSSRGGGGFGRSRRYSSGGRGDSGFGAKSYDSGYGGRGNDSGYGGRGSDSSYGGRGGYGSSAAFGRGGGRGFDYDSQRNERDRSPDRGSSWSDRFKTRERSRSPVKATASAASQYTPGVSFHQAMMERNGGGSDRNKSFNRERSRSHSPYRQDKGKSSRSPPGGGRTNSSPQKGWGGSSGVGRNGGSHPYNGELEEGMIPEEEGMIGHDESSIYRSAN 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04464 757 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 163 191 IPR014014 GO:0003724
Vivi2g04464 757 SMART ultradead3 182 385 IPR014001 -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 91 121 - -
Vivi2g04464 757 Gene3D - 14 61 - -
Vivi2g04464 757 Pfam Helicase conserved C-terminal domain 394 502 IPR001650 -
Vivi2g04464 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 368 IPR014001 -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 47 78 - -
Vivi2g04464 757 CDD WW 20 49 IPR001202 GO:0005515
Vivi2g04464 757 Gene3D - 373 543 IPR027417 -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 673 693 - -
Vivi2g04464 757 ProSitePatterns WW/rsp5/WWP domain signature. 23 49 IPR001202 GO:0005515
Vivi2g04464 757 FunFam probable ATP-dependent RNA helicase DDX17 137 371 - -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 1 23 - -
Vivi2g04464 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 518 IPR027417 -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 47 121 - -
Vivi2g04464 757 SUPERFAMILY WW domain 11 50 IPR036020 GO:0005515
Vivi2g04464 757 SMART helicmild6 422 502 IPR001650 -
Vivi2g04464 757 Pfam DEAD/DEAH box helicase 187 356 IPR011545 GO:0003676|GO:0005524
Vivi2g04464 757 ProSiteProfiles WW/rsp5/WWP domain profile. 17 51 IPR001202 GO:0005515
Vivi2g04464 757 MobiDBLite consensus disorder prediction 643 659 - -
Vivi2g04464 757 SMART ww_5 18 51 IPR001202 GO:0005515
Vivi2g04464 757 Pfam WW domain 19 49 IPR001202 GO:0005515
Vivi2g04464 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 541 IPR001650 -
Vivi2g04464 757 Gene3D - 140 372 IPR027417 -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 612 642 - -
Vivi2g04464 757 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 114 541 - -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 534 757 - -
Vivi2g04464 757 FunFam ATP-dependent RNA helicase RhlB 372 544 - -
Vivi2g04464 757 CDD SF2_C_DEAD 382 511 - -
Vivi2g04464 757 MobiDBLite consensus disorder prediction 700 716 - -
Vivi2g04464 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 314 322 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04464 Vivi-Chr2 159248247 159253800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04464 161 540 Eukaryotic Initiation Factors Gene Family AT3G19760 33.159 7.50e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04464 K12823 - gmx:100786511 1044.26