Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04449 ATGGCATCTAGCTACTACTCAAATCCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAACGAAGATTGCATATTTGCACCCTATTTTCCACCAGAAGAGCCTCATAAATTTGTAAATGTTCATAAAATATTTGGTGCAAGTAATGTTAGCAAAATTCTGAATGAAGTGTTACCTCATCAAAGGGAAGATGCAGTGAACTCTTTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCTGTTTATGGTTGTGTTGGAGCTATTTCAGTTCTTCAGAAACAACTTCTTAGCCTTCAAAAAGAACTTGATGCTGCTAATGCTGATTTGATTAGGTTTAACCATCAAGGTTCTTCTTCTTTTGGACATCTTAACTCTCATGGTTTTTATAATTATCCTTCTGATTAA 408 0.3529 MASSYYSNPPCAACKFLRRKCNEDCIFAPYFPPEEPHKFVNVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQLLSLQKELDAANADLIRFNHQGSSSFGHLNSHGFYNYPSD 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04449 135 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 115 - -
Vivi2g04449 135 Coils Coil 89 116 - -
Vivi2g04449 135 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vivi2g04449 135 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04449 Vivi-Chr2 159005337 159006730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04449 4 122 AS2 family AT3G27650 73.984 4.44e-66 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04449 LOB 5.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04449 - - mtr:11423777 231.876