Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04448 ATGGCATCTAGCTACTCATCAAATCCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCCATGAAGATTGCATATTTGCACCCTATTTTCCAGCAGAAGAGCCTCATAAATTTGTAAATGTCCACAAAATATTTGGTGCAAGTAATGTTAGCAAAATTCTGAATGAAGTTTTACCTCATCAAAGAGAAGATGCAGTGAACTCTTTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCTGTTTATGGCTGTGTTGGAGCTATTTCAGTTCTTCAAAAACAACTTCTTAGCCTTCAAAAAGAACTTGATGCTGCTAATGCTGATTTGATTAGGTTTAATCATCAAGGTTCTTCTTCTTATGGACAAGTTCACTCTCATGTTTTTTTTAATTACCCTTCTAATTAA 408 0.3505 MASSYSSNPPCAACKFLRRKCHEDCIFAPYFPAEEPHKFVNVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQLLSLQKELDAANADLIRFNHQGSSSYGQVHSHVFFNYPSN 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04448 135 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
Vivi2g04448 135 Coils Coil 89 116 - -
Vivi2g04448 135 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vivi2g04448 135 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04448 Vivi-Chr2 158976841 158977312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04448 7 122 AS2 family AT3G27650 74.167 3.29e-64 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g04448 LOB 3.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04448 - - mtr:11423777 226.868