Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04408 ATGGAATCTCCCGGAAAAGACCATTTGGTTGGAGGAGGAGAATCTAACGACGTTGGTAGAACCTTTAATCACAGAGATGAACAAGAACACGAACACGAACAACAACACCATAACTCTCAACCCCTTACCGGCGATGGTGCTAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACAACCATTGCTCAATTTATCAAGCACTTCGGTAAATATGGTGAGATTACCGATTCGGTTATCATGAAGGACAGGAAGACTGGACAGCCTCGTGGTTTTGGGTTTATTACTTATTCCGACCCGTTGGTTGTTGATAAAGTCATTGAAGATCCTCATGTCATCAATGGCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTTTTCACACGTTATGGAGAAGTCAAAGATCACCAAATAATGCGAGACCACTCTACCAATCGTTCTCGTGGCTTTGGGTTTGTCACCTTTGACACAGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGACTAACCCACCGCCTCCATCATCCAAGCGATACAATGACTCAAGGTCTTCATACGGCAGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGCTTTGGTGTTGGGGGTGGTTACAGTAGGTCAGGCAGTGTATATGGTGGTAGGGGAGGTGCATATGGTGGCTATGGAAGTGAATTTGCTGGCTATGGTGGATATGCAGGGGCAATGGGAGGGCCCTACAGAGGCGATCCTTCCTTAGGCTATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTACGATCTTAGTGGGTATGGTGGACCTGGTGAAAGTTATGGGGCTTATGGTGGTGCCAGTGCGGGTGCTGCTGCTAGTGGAGGTGGTTCTTCCGGCTCTGCTGCGTATCAAAGTGGCTATGATGCCAGCCTTGGGGGTGGATATGGAGGAGGAGCTAGTGGAGCCTCCTTCTATGGAAGCAGAGGAGGATATGGTGCTGGTCGATATCATCCGTATGGAAGATAG 1161 0.4694 MESPGKDHLVGGGESNDVGRTFNHRDEQEHEHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYSDPLVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKTNPPPPSSKRYNDSRSSYGSGGYGDAYDGFGGGFGVGGGYSRSGSVYGGRGGAYGGYGSEFAGYGGYAGAMGGPYRGDPSLGYAGRYGGSFSRGYDLSGYGGPGESYGAYGGASAGAAASGGGSSGSAAYQSGYDASLGGGYGGGASGASFYGSRGGYGAGRYHPYGR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04408 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Vivi2g04408 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 126 IPR000504 GO:0003723
Vivi2g04408 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Vivi2g04408 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
Vivi2g04408 386 FunFam Heterogeneous nuclear ribonucleoprotein 1 49 130 - -
Vivi2g04408 386 FunFam Heterogeneous nuclear ribonucleoprotein 1 131 252 - -
Vivi2g04408 386 Gene3D - 138 221 IPR012677 -
Vivi2g04408 386 MobiDBLite consensus disorder prediction 209 235 - -
Vivi2g04408 386 MobiDBLite consensus disorder prediction 1 51 - -
Vivi2g04408 386 Gene3D - 20 133 IPR012677 -
Vivi2g04408 386 SMART rrm1_1 51 122 IPR000504 GO:0003723
Vivi2g04408 386 SMART rrm1_1 139 212 IPR000504 GO:0003723
Vivi2g04408 386 MobiDBLite consensus disorder prediction 19 38 - -
Vivi2g04408 386 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 25 386 - -
Vivi2g04408 386 SUPERFAMILY RNA-binding domain, RBD 39 128 IPR035979 GO:0003676
Vivi2g04408 386 SUPERFAMILY RNA-binding domain, RBD 130 227 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04408 Vivi-Chr2 158477332 158480801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04408 50 206 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 2.60e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04408 K12741 - gmx:100793209 447.588