Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04401 ATGGATTCACGTATCAACGCTGTTGATTCTGTATCAGAGGTTCAGAATTCGGTTTCTAGGGTACCTGCGGTACCGATACGCCACAGTCTTCCTTTAACATCAGGGATTCCTCGTCCTTCGCGGCCTCCCTTATATAGAAATAATCACGGAGCTTCTTCTTCTTCCGCGCCATTTTTGGAGCAAAGGCATCGTCATAATAATTATGGAACGAAGAACATTCACTGTCATAACAGCTATGTAGTTAATCGAAAGCATTCATATCAAGACAGAAGATTATGCAGCAAGCAACTGTTTGATGATGGTTCCAAGAATTGTGAGTCGTGTTCTGTAATATTAGAATCCGACAATTGTATCTTAGTTACATCGAAACGAGGTGTTGTTATTAATCAACCGAAGAATTGCCATTGTCAGTCAGAGATTAGTTTTTGTCATAGTCCTCAGAATAGTTTACATTCGACCACTGCCTATTCGGAAGCGAAACAAAGTTTCACCAATACTGAAGTCAGTGAGTGTGTTAGTGTTGATGATGATGATAATTCGTGCGAAAGTGGAGAAATTTCGAATTCGTGTGATTTTAATGAAAGTATGAAAACCAGCATCTATAGAGCGAGTACAGTAAGTGATGTTAGCAACGAAAGCAGCACGAGTAGTTTGAGTAGTGCTTTGTACAAACCTCATAAGGCGAATGATATAAGATGGGAAGCGATTCGAGCTGTGCGAGCACGTGTCGGGGTGTTGGAAATGAGGCATTTTAGGTTGATGAAGAAATTGGGATGTGGAGATATAGGAAAAGTATATCTAGCTGAACTGAGTGGCACAAGGACTTGTTTTGCTATGAAACTCATGAATAAAACCGAGCTCGCAAGTCGGAAGAAGCTTGTAAGAGCTCAGACGGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTTTACCTACATTATATACGCATTTCGAGACTGAGAGAATCTCTTGCTTGGTAATGGAGTTTTGTCCCGGTGGCGACCTTTATTCAATAAGGCAAAGACAACCTGGGAAGTATTTCTCAGAGCATGCTGCCAGATTTTATGTTGCAGAAGTTCTCCTTGCTTTGGAGTATTTACACATGCTTGGAATCATCTATAGAGACCTTAAACCGGAGAATGTGTTGGTTAGAGAAGACGGTCATATAATGCTTTCGGATTTCGATCTCTCTTTAAGGTGTACCGTCAGTCCAACTCTCGTGAAATCATCAAACCCGATCGTCGAAACAAAAAGATCAGGATACTGCATTCAGCCAAGATGTGCAATGCAGCCAGACTGCATCCAACCTGCATGCTTTTCGCCGCGGTTTCTATCCAGTAAATCCAGAAAAGAAAGAAAATTCAGACCAAAGAATGACATGCATCATCACCAAGTGACACCTCTCCCTGAGCTAATCGCTGAACCAACAAGTGCACGATCGATGTCCTTTGTAGGCACACACGAGTACTTGGCGCCTGAGATTATTAAAGGCGAAGGACACGGAAGTGCTGTGGATTGGTGGACGTTTGGTATATTCTTATACGAACTCTTGTTTGGTCGAACACCGTTCAAAGGCTCTGCAAACCGAGCGACGCTGTTCAATGTTGTCGGGCAGCCTTTAAGGTTTCCGGAGTCTCCTACTGTCAGCTTCGCAGCAAGGGATTTGATCAGAGGCTTGCTTGTGAAAGAGCCTCAACACCGTCTTGCCTATAGACGCGGAGCAACCGAAATCAAACAACATCCGTTTTTTCATAATGTGAACTGGGCGCTGATCCGTTGCGCTAATCCGCCCGAGGTACCGAGAGACACCGTGATGATGAAACCAACTTCAACTGAAAATGAAGTTGGCATGAACTCTTCTAGTAATTATTTAGATGTTGATTTCTTTTGA 1893 0.4289 MDSRINAVDSVSEVQNSVSRVPAVPIRHSLPLTSGIPRPSRPPLYRNNHGASSSSAPFLEQRHRHNNYGTKNIHCHNSYVVNRKHSYQDRRLCSKQLFDDGSKNCESCSVILESDNCILVTSKRGVVINQPKNCHCQSEISFCHSPQNSLHSTTAYSEAKQSFTNTEVSECVSVDDDDNSCESGEISNSCDFNESMKTSIYRASTVSDVSNESSTSSLSSALYKPHKANDIRWEAIRAVRARVGVLEMRHFRLMKKLGCGDIGKVYLAELSGTRTCFAMKLMNKTELASRKKLVRAQTEREILQSLDHPFLPTLYTHFETERISCLVMEFCPGGDLYSIRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNPIVETKRSGYCIQPRCAMQPDCIQPACFSPRFLSSKSRKERKFRPKNDMHHHQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRDTVMMKPTSTENEVGMNSSSNYLDVDFF 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04401 630 Gene3D Transferase(Phosphotransferase) domain 1 479 602 - -
Vivi2g04401 630 SMART serkin_6 251 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04401 630 Gene3D Phosphorylase Kinase; domain 1 249 334 - -
Vivi2g04401 630 SUPERFAMILY Protein kinase-like (PK-like) 229 608 IPR011009 -
Vivi2g04401 630 Gene3D Transferase(Phosphotransferase) domain 1 335 403 - -
Vivi2g04401 630 CDD STKc_phototropin_like 249 602 - -
Vivi2g04401 630 Pfam Protein kinase domain 481 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04401 630 Pfam Protein kinase domain 252 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04401 630 FunFam Serine/threonine-protein kinase D6PK-like 249 334 - -
Vivi2g04401 630 PANTHER FLIPPASE KINASE 1-RELATED 109 608 - -
Vivi2g04401 630 ProSiteProfiles Protein kinase domain profile. 251 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04401 630 FunFam serine/threonine-protein kinase D6PK-like 335 402 - -
Vivi2g04401 630 FunFam serine/threonine-protein kinase D6PK-like 479 602 - -
Vivi2g04401 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04401 Vivi-Chr2 158433245 158436001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04401 153 630 AGC Kinase Gene Family AT5G47750 68.263 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi2g04401 Pkinase 5.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04401 K08286 - gmx:100810909 910.598