Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04379 ATGGTGAAAGCAATATCTCTAACTCACCACCTATCCTTCCTCCTACCTCACACAGCTTCTTCTAGATTCTTCCGCCCACTTCGATTCCTCTCCACAACTCCAACCCCATACCCTCTCCAATACGAACTTATCATAAACCGCCCCGACCTCCCCAAACCCAACCACCACCGTCGAACCGCCAAACCCCCAAACTCACCCGAACCAAACCAGCCCGACTCGCTCCATGACTGGGCCGACGATAAACTAACCACCGAACCCGGTTCGTCTGAACTCGATAAAGCCAAGAGGAAGTACTACAATAAACGGAGGAAGAGAATGTATGGGTCCGATTCCGATGAGGAGAATCGGAGAAATGAAGAGCAGTTTGTGGAAATGAAACCGGAAGTGGTGGAACTGAGAACTTTGCATAGGAGAGAAGAGGAATTGCATTTTTATGATGCTTTTGCTTATCCTTGGGAGAAGGATAAGCATTACAAAATGGTTTATCAATTGGAGAAGAAGTTTTTTCCTGATCAGTGTTTGGATAAAGCTTTTCTTCAACCAGGTCAATCCAATTCAAATTCAATTTCAGTTTCAAATTCGAATGCGAATGCGAATGCTAGGGTTAGAAAGAAGAAAGTTGGTGTTTTTGGTGGGGAGAATGAAGGTGAAAAGGTTGGTGATGGTGATAACAAGTTGGTGTTTTTTGAGGAGAATGTGAAAGGAGAAGAAGAAAGAGAAAAGGGCAAGAAGATTGAGAATAGAGATCATAGTGAGAAGAAGGTTGAGGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAGTTGTGGAGCCGTTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATTCTCAGCATGGGACAGTGCTTCTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGGAAGCTGCGTCGCCTTGTTAAAGTGAAAAAGGTTGGCCATGCTGGAACTCTTGATCCAATGGCAACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACAAAACTGGTGGATAGATATCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACGTGGGATGCTGATTCACCAGTTATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCATTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATTTTCCAATTTGACGTTGAGCGGAGCTTGGACGACAGACAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGTTGTGCCCATTTAACGGCTCTCCGAAGAGATTCAATCGGACAATATTTAGCCGATGATGCATGGGAGTTTCAAGAGCTGGAAGAGTCTATCACCAAAACGTATCTTTAA 1527 0.4335 MVKAISLTHHLSFLLPHTASSRFFRPLRFLSTTPTPYPLQYELIINRPDLPKPNHHRRTAKPPNSPEPNQPDSLHDWADDKLTTEPGSSELDKAKRKYYNKRRKRMYGSDSDEENRRNEEQFVEMKPEVVELRTLHRREEELHFYDAFAYPWEKDKHYKMVYQLEKKFFPDQCLDKAFLQPGQSNSNSISVSNSNANANARVRKKKVGVFGGENEGEKVGDGDNKLVFFEENVKGEEEREKGKKIENRDHSEKKVEEFFKGLKKDVEVVEPFFSSRRTGLPPVWDSQHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDVERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWEFQELEESITKTYL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04379 508 SUPERFAMILY Pseudouridine synthase 290 502 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi2g04379 508 CDD PseudoU_synth_EcTruB 291 501 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi2g04379 508 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 168 506 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi2g04379 508 FunFam tRNA pseudouridine synthase B 285 507 - -
Vivi2g04379 508 Pfam tRNA pseudouridylate synthase B C-terminal domain 461 503 IPR032819 -
Vivi2g04379 508 Pfam TruB family pseudouridylate synthase (N terminal domain) 310 460 IPR002501 GO:0006396
Vivi2g04379 508 MobiDBLite consensus disorder prediction 48 97 - -
Vivi2g04379 508 NCBIfam tRNA pseudouridine(55) synthase TruB 290 499 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi2g04379 508 Gene3D Pseudouridine synthase 284 507 - -
Vivi2g04379 508 MobiDBLite consensus disorder prediction 73 96 - -
Vivi2g04379 508 Hamap tRNA pseudouridine synthase B [truB]. 288 507 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04379 Vivi-Chr2 158023960 158030134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04379 291 482 NAC Transcription Factor Family AT3G57150 32.812 5.50e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04379 K03177 - gmx:100793939 664.455