Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04338 ATGGAAGACGAAGAAGAAGTGTTGTCGTCGCCGTCTTCTTCCGATTCCGATCCCGATTTCGACACCGATTCCGGCGACGCTGAAAATGAAGTCGAACAGCGAAAATCTCAAAATGTAGAAGCACTCATCCAAGGCAACCTGATCGTGAGGAGACAATCGTTGCTACCGCGAGTGTTATCAGTAGGTACCAACGGAGCCGCCGTTTGCAGAAAACCATTCAAACCTCCATCCAATGCTGCTTACACCAACAACCAAGACCTTTCTCGTAGACTCTCTGCTCGCAAAAGGTTTGTTCCATGGGGTTCCACTACTCCTATTCCAATTCCTAACCCTACACATTCGCCTTTATTGGAGTTGAATTTGAATGTCCCGGCCCCCGAGGAGGAAGTGAAACCCTCACCTTTGCCTCCGGGAATTGAGCCTCTTGTACTCTGGCAACCTCCTCATGAGGATCCTCCTGATCCTGATTCGAATTTCACAGCAATATCAGTTGATACGTTGCTGGTTCGCTTCCTTCGTCCGCATCAGAGAGAAGGAGTTCAATTTATGTTTGACTGTGTTGCGGGACTGTGTGATACTCCTGATATCAATGGATGCATTTTGGCCGATGATATGGGTTTGGGGAAGACACTGCAGTCCATTACATTACTGTACACTCTAATTTGTCAAGGCTTTGATGGGAAACCTATGGTTAGAAAGGCCATCATTGTCACTCCTACCAGTCTAGTTAGCAATTGGGAAGCTGAAATAAAGAAGTGGGTTGGAGAGAGGATTCGCCTTGTTGCTCTATGTGAAAGCACGCGGGAAGATGTTATCTCTGGGATTAACAGTTTTACGAGTCCCCGAAGCAATTTGCAGGTGCTCATTATTTCATATGAGACATTCCGAATGCATTCGTCCAAGTTTAGTGATAGTGGATCGTGTGATCTCCTCATATGTGACGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTCACTAATCCTGGAGTATTGGGTCACATTGCACATTTTCGACGTTATTTTGAGGCACCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAACCAGTTCATTCTAAGACGGACTAATGCGTTGTTATCAAATCATTTACCACCGAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAATCAGATCTATATAAACATTTTATACAATCCAAAAATGTTAAACGTGTGATTAATGAAGAAGTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCTAAGCTCATTTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGAACTGCATCCGATTCTTCCCTCCAAATATGTCTTCTGGAAGGTCTGGAGGGCATGGAGGCTGGGTTGAGCTTTCTGGTAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAGAGAACAGACGACCGTATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAATGACCCGTCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCCAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTACCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAAATGTCAAAAGAAGGGTTGCAAAAGGTTATTCAGCGGGAGCAAAATGACAGCGCTACGGCACAGGGTAATCTTCTTTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAACGTCAAGTCAGAGATTCATGAAAATATGCGATGTAGTCGGTGCCAAACATATGATGGGCCTCAAGACACTGATGTCTTATCGACAATGATTAATTGCGAAGGTGATGATGAAGAAACCTCTGATATAGGCGGATTTGCTGAAATTTCAGGCTGCTTAGGGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTCCCCAGCCTCTGTACCAGATGGTATCCTTCAGGCTTCAGCTGGAGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGACGGAAAGCTGGTACCGGTTGACTCAATGAGTCCCAAAGTACAGAAAAAGGAATTACACAGGCCTAGGCGGAACGTTGAGAGAAAATCTACTCTTTTTTCTTCACATAATAAGCTAGTACCACTACATTCTGCATCTCATTCATCTTCGATTGCTTGGAAGAAAGAAGCAACGAGTTGTGAAATTACCAAAAAAGTTGGCATAGATGTAGCATCGAACACCAAAAACTCTCTTGTAAATGAAATATCAAAACAGAAAAGATCATGCCCTGCTGATATCAATGATGAGCACTCTCTTCTAAATGAAGTATCACAAAAAAAAATATGTCATGTTGTTATCAGTGATGATGATTTTGAGTAA 2769 0.4254 MEDEEEVLSSPSSSDSDPDFDTDSGDAENEVEQRKSQNVEALIQGNLIVRRQSLLPRVLSVGTNGAAVCRKPFKPPSNAAYTNNQDLSRRLSARKRFVPWGSTTPIPIPNPTHSPLLELNLNVPAPEEEVKPSPLPPGIEPLVLWQPPHEDPPDPDSNFTAISVDTLLVRFLRPHQREGVQFMFDCVAGLCDTPDINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERIRLVALCESTREDVISGINSFTSPRSNLQVLIISYETFRMHSSKFSDSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGVLGHIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRVINEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFENCIRFFPPNMSSGRSGGHGGWVELSGKMQVLARLLAQLRQRTDDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQREQNDSATAQGNLLSTEDLRNLFTFDENVKSEIHENMRCSRCQTYDGPQDTDVLSTMINCEGDDEETSDIGGFAEISGCLGNLKRSEKQVGNPLEEDLSSWGHHFSPASVPDGILQASAGDEVTFVFTNQVDGKLVPVDSMSPKVQKKELHRPRRNVERKSTLFSSHNKLVPLHSASHSSSIAWKKEATSCEITKKVGIDVASNTKNSLVNEISKQKRSCPADINDEHSLLNEVSQKKICHVVISDDDFE 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04338 922 Gene3D - 413 716 IPR027417 -
Vivi2g04338 922 MobiDBLite consensus disorder prediction 1 37 - -
Vivi2g04338 922 CDD SF2_C_SNF 520 648 - -
Vivi2g04338 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 801 IPR027417 -
Vivi2g04338 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 413 IPR027417 -
Vivi2g04338 922 SMART helicmild6 553 637 IPR001650 -
Vivi2g04338 922 Gene3D - 150 412 IPR038718 -
Vivi2g04338 922 Pfam Helicase conserved C-terminal domain 528 636 IPR001650 -
Vivi2g04338 922 Gene3D - 435 700 - -
Vivi2g04338 922 SMART ultradead3 168 371 IPR014001 -
Vivi2g04338 922 CDD DEXHc_RAD54 172 413 - -
Vivi2g04338 922 FunFam Predicted protein 435 509 - -
Vivi2g04338 922 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 363 IPR014001 -
Vivi2g04338 922 FunFam DNA repair and recombination protein RAD54-like 513 684 - -
Vivi2g04338 922 PANTHER SNF2/RAD54 FAMILY MEMBER 71 818 - -
Vivi2g04338 922 Pfam SNF2-related domain 175 481 IPR000330 GO:0005524|GO:0140658
Vivi2g04338 922 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 686 IPR001650 -
Vivi2g04338 922 FunFam DNA repair and recombination protein RAD54 141 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04338 Vivi-Chr2 157311223 157321611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04338 198 657 RAD5 or RAD16-like Gene Family AT3G16600 24.765 1.64e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g04338 SNF2_N 2.3e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04338 K10875 - gmx:100781631 1366.67