Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04311 ATGGAACCTGCTGAGCTTATTTCTCAAGAATGGAGTTCTCTTAGTGGACTCTACACTGCTGAGGAATCTGATTTCATGAATCAGTTACTTGGTAACTGCTCACTCCCACAACACCCCAATCAAAACTCCGATTTCGGAACTGAATCTGCATTTTGGCCAGCACACGATTCCACAACAGTTACTGTCACAAAAAATAACAACTATTCTAACTTTGCTGCTCAATTTCCTAGCTCAACTTCTGATACTAGTTGCATTAACAATACATTAACCAGCTTTGAGTATATTGCTTTGGGACTTTCCGTAGATGATTCCAAATTCGGTCCATATACAACACAACCTAATGAACAATTTCTAGCTAACAAGAAATTGCAGTCCCCAAAGGAACATGAAATACTAGTTTCTGAGCCAGAAGAGAACACCGTACGGAAAGAAAACTCAATGAAAAGATCTAGGAGCTCGAATGAGGTCTCCAGGAGCAAGAGGAATGTTAAATGTAGGAAGAATATGAGATGTGGTTCTAGAAGCACTGACGATCTGACCTTAATCAGTTGTTGTTCAGAGGATGAGTCCAATTCTTCTCATGAACTACATGGAGGGTCGTGTTCAAGTTTGAGCCAGAATGATTCCACAGCTATGAAGTTAAGTGGTAAATCAAGATCTAGTCGAGGTGCTGCTACTGATCCACAAAGCCTATATGCAAGAAAAAGAAGAGAGAGAATAAATGAAAGGCTGCGAATCTTACAAAACCTTGTCCCTAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTGTGGATGTACTCTCCCATTGCTTACAATGGAATGAACATTGGACAAGAACTTGGTATTACCCCAGCAAAAGAAACAAAGGATATGCAATAG 945 0.3979 MEPAELISQEWSSLSGLYTAEESDFMNQLLGNCSLPQHPNQNSDFGTESAFWPAHDSTTVTVTKNNNYSNFAAQFPSSTSDTSCINNTLTSFEYIALGLSVDDSKFGPYTTQPNEQFLANKKLQSPKEHEILVSEPEENTVRKENSMKRSRSSNEVSRSKRNVKCRKNMRCGSRSTDDLTLISCCSEDESNSSHELHGGSCSSLSQNDSTAMKLSGKSRSSRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGQELGITPAKETKDMQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04311 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Vivi2g04311 314 Gene3D - 226 282 IPR036638 GO:0046983
Vivi2g04311 314 SMART finulus 230 279 IPR011598 GO:0046983
Vivi2g04311 314 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 297 - -
Vivi2g04311 314 MobiDBLite consensus disorder prediction 191 234 - -
Vivi2g04311 314 CDD bHLH_AtIND_like 225 287 - -
Vivi2g04311 314 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
Vivi2g04311 314 MobiDBLite consensus disorder prediction 191 227 - -
Vivi2g04311 314 FunFam Basic helix-loop-helix transcription factor 225 282 - -
Vivi2g04311 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 289 IPR036638 GO:0046983
Vivi2g04311 314 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04311 Vivi-Chr2 156965531 156967328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04311 10 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.588 5.88e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g04311 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04311 - - mtr:11440124 412.92