Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04303 ATGGAAGACGAAGAAGAAGTGTTGTCGTCGCCGTCTTCTTCCGATTCCGATCCCGATTTCGACACCGATTCCGGCGACGCTGAAAATGAAGTCGAACAGCGAAAATCTCAAAATGTAGAAGCACTCATCCAAGGCAACCTGATCGTGAGGAGACAATCGTTGCTACCGCGAGTGTTATCAGTAGGTACCAACGGAGCCGCCGTTTGCAGAAAACCATTCAAACCTCCATCCGATGCTGCTTACACCAACAATCAAGACCTTTCTCGTAGACTCTCTGCTCGCAAAAGGTTTGTCCCATGGGGTTCCACTACTCCTATTCCTCTTCCTAACCCTACACATTCGCCTTTATTGGAGTTGAATTTGAATGTCCCAGTCCATGAGGATGAAGTGAAACCCTCACCCTTGCCCCCTGGAATTGAGCCTCTTGTACTCTGGCAACCTCCTCATGAGGATCCTCCTGATCCTGATTCTAATTTCACAGCAATATCAGTTGATGCGTTGCTGGTTCGCTTCCTTCGTCCGCATCAGAGAGAAGGAGTTCAATTTATGTTTGACTGTGTAGCAGGACTGTGTGATACTCCTGATATCAATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACACTGCAATCCATTACATTACTGTACACTCTAATTTGTCAAGGCTTTGATGGGAAACCTATGGTTAGAAAGGCTATCATTGTCACTCCTACCAGTCTAGTTAGCAATTGGGAAGCTGAAATAAAGAAGTGGGTTGGAGAAAGGATTCACCTTGTTGCTCTATGTGAAAGCACGCGAGAAGATGTTATCTCTGGGATTAACAGTTTTACGAGTCCCCGAAGCAATTTGCAGGTGCTCATTGTTTCATATGAGACATTTCGAATGCATTCGTCCAAGTTTAGTGATAGTGGATCGTGTGATCTCCTCATATGTGACGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCTGCTCTCCCGTGCAAACGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTCACTAATCCTGGAGTATTGGGTCACATTGCACATTTTCGACGTTATTTTGAGGCACCGATAATTTGCGGAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAACCAGTTCATACTAAGACGGACTAATGCGTTGTTATCAAATCATTTACCACCGAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAGTCAGATCTATATAAACATTTTATACAATCCAAAAATGTTAAACGTGTGATTAATGAAGAAGTGAAGCAGTCAAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCTAAGCTCATCTATGATACCATACGAAATGGGAGTCCAGGAACTTCAGGTTTTGAGAACTGCATCCGATTCTTCCCTCCAAATATGTCATCTGGAAGGTCTGGATCAGGGACAGGAGGGCATGGAGGCTGGGTTGAGCTTTCTGGTAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAGAGAACAGACGACCGTATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAATGACCCGTCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTGGTCTTGTTTGATCCTGATTGGAATCCAGCCAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTACCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAAATGTCAAAAGAAGGGTTGCAAAAGGTTATTCAGCGGGAGCAAAATGACAGCGCTACGGCACAGGGTAATCTTCTTTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAACGTCAAGTCAGAGATTCATGAAAATATGCGATGTAGTCGGTGTCAAACATATGATGGGCCTCAAGACACTGATGTCTTATCGACAATGATTAATTGCGAAGGTGATGATGAAGAAACCTCTGATATAGGCGGATTTGCTGAAATTTCAGGCTGCTTAGGGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTCCCCAGCCTCTGTACCAGATGGTATCCTTCAGGCTTCAGCTGGAGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGACGGAAAGCTGGTACCGGTTGACTCAATGAGTCCCAAAGTACAGAAAAAGGAATTACACAGGCCTAGGCGGAACGTTGAGAGAAAATCTACTCCTTTTTCTTCACATAATAAGTTAGTACCACTACGTTCTGCATCTCATTCATCTTCGATTGCTTGGAAGAAAGAAGCAACGAATTGTGAAATTACCAAAAAAGTTGGCATAGATGTAGCATCGAACACCAAAAACTCTCTTGTAAATGAAATATCGAAACAGAAAAGATCATGCCCTGCTGATATCAATGATGAGCACTCTCTTCTAAATGAAGTATCACAGAAAAAAATATGTCATGTTGTTATCAGTGATGATGATTTTGAGTAA 2781 0.425 MEDEEEVLSSPSSSDSDPDFDTDSGDAENEVEQRKSQNVEALIQGNLIVRRQSLLPRVLSVGTNGAAVCRKPFKPPSDAAYTNNQDLSRRLSARKRFVPWGSTTPIPLPNPTHSPLLELNLNVPVHEDEVKPSPLPPGIEPLVLWQPPHEDPPDPDSNFTAISVDALLVRFLRPHQREGVQFMFDCVAGLCDTPDINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERIHLVALCESTREDVISGINSFTSPRSNLQVLIVSYETFRMHSSKFSDSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGVLGHIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRVINEEVKQSKILAYITALKKLCNHPKLIYDTIRNGSPGTSGFENCIRFFPPNMSSGRSGSGTGGHGGWVELSGKMQVLARLLAQLRQRTDDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQREQNDSATAQGNLLSTEDLRNLFTFDENVKSEIHENMRCSRCQTYDGPQDTDVLSTMINCEGDDEETSDIGGFAEISGCLGNLKRSEKQVGNPLEEDLSSWGHHFSPASVPDGILQASAGDEVTFVFTNQVDGKLVPVDSMSPKVQKKELHRPRRNVERKSTPFSSHNKLVPLRSASHSSSIAWKKEATNCEITKKVGIDVASNTKNSLVNEISKQKRSCPADINDEHSLLNEVSQKKICHVVISDDDFE 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04303 926 Gene3D - 150 412 IPR038718 -
Vivi2g04303 926 FunFam DNA repair and recombination protein RAD54 141 412 - -
Vivi2g04303 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 805 IPR027417 -
Vivi2g04303 926 Pfam SNF2-related domain 175 481 IPR000330 GO:0005524|GO:0140658
Vivi2g04303 926 CDD SF2_C_SNF 524 652 - -
Vivi2g04303 926 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 690 IPR001650 -
Vivi2g04303 926 FunFam DNA repair and recombination protein RAD54-like 520 688 - -
Vivi2g04303 926 Gene3D - 413 720 IPR027417 -
Vivi2g04303 926 SMART ultradead3 168 371 IPR014001 -
Vivi2g04303 926 Gene3D - 435 704 - -
Vivi2g04303 926 FunFam Predicted protein 435 509 - -
Vivi2g04303 926 SMART helicmild6 557 641 IPR001650 -
Vivi2g04303 926 PANTHER SNF2/RAD54 FAMILY MEMBER 71 822 - -
Vivi2g04303 926 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g04303 926 Pfam Helicase conserved C-terminal domain 532 640 IPR001650 -
Vivi2g04303 926 CDD DEXHc_RAD54 172 413 - -
Vivi2g04303 926 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 363 IPR014001 -
Vivi2g04303 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 413 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04303 Vivi-Chr2 156763136 156779304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04303 198 661 RAD5 or RAD16-like Gene Family AT3G16600 24.765 1.05e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi2g04303 SNF2_N 4.5e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04303 K10875 - gmx:100781631 1369.37