Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04275 ATGATGGAGAAGACCGGAGCCGGTAGGAAGGAAGAGGTGGTTACCAGAGAGTACACCATCAACCTCCATAAACGCCTCCATGGATGCACATTTAAGAAGAAGGCTCCTAAAGCCATCAAGGAGATTAGGAAGTTTTCCCAAAAAGCAATGGGAACCAACGACGTTCGTGTTAACGTCAAGTTGAACAAGGCTATATGGAGCCAGGGTATTAGAAGTGTCCCAAGAAGAATCAGGGTACGCATTGCTCGCAAGAGAAACGATGATGAGGATGCTAAGGAAGAGGTCTATTCTCTTGTTACCGTTGTCGAAATCCCCAAGGAGGAGCTTAAAGGTTTGGGCACTAAGGTTATTGATGATGAAGATTAA 366 0.4536 MMEKTGAGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFSQKAMGTNDVRVNVKLNKAIWSQGIRSVPRRIRVRIARKRNDDEDAKEEVYSLVTVVEIPKEELKGLGTKVIDDED 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04275 121 Pfam Ribosomal protein L31e 12 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi2g04275 121 CDD Ribosomal_L31e 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi2g04275 121 PANTHER 60S RIBOSOMAL PROTEIN L31 2 120 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi2g04275 121 SMART Ribosomal_L31e_2 11 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi2g04275 121 Gene3D - 10 121 IPR023621 -
Vivi2g04275 121 SUPERFAMILY Ribosomal protein L31e 12 93 IPR023621 -
Vivi2g04275 121 FunFam 60S ribosomal protein L31 7 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04275 Vivi-Chr2 156507246 156507813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04275 2 121 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 80.833 3.47e-66 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04275 K02910 - gmx:100499742 207.608