Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04273 ATGGGTCACTCCAACGTCTGGAACTCTCACCCCAAAACCTACGGACCTGGTTCTCGCACATGCCGTGTGTGTGGAAACTCTCATGGATTGATCAGGAAGTACGGACTCATGTGCTGCAGGCAGTGCTTCCATAGCAATGCCAAGGAAATCGGTTTCATTAAGTATCGTTGA 171 0.4971 MGHSNVWNSHPKTYGPGSRTCRVCGNSHGLIRKYGLMCCRQCFHSNAKEIGFIKYR 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04273 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Vivi2g04273 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 56 IPR039744 GO:0003735|GO:0008270
Vivi2g04273 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
Vivi2g04273 56 FunFam 40S ribosomal protein S29 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04273 Vivi-Chr2 156455802 156457194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04273 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.857 1.18e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04273 K02980 - lsv:111921360 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04273 2 156455802 156457194 Vivi1g03929 1 82840893 82841578 PCT