Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04272 ATGGCCACAACACCAGTAGTGTCCGGTCGAGAGTTGACCAATCCTCCGTCCGACGGAATCTCCAACATTCGTTTCTCTAATCACAGTGATCATCTTCTCGTTTCCTCATGGGACAAGACTGTGCGTTTGTATGACGCAAGCGCAAATGTGCTTAGAGGAGAGTTTCTCCACGGCGGACCCGTTCTTGACTGTTGCTTCCATGATGACTCTTCCGGATTTAGTGCCTCCTCCGATAACACTGTCAGACGGCTCGTTTTCGCCACAGGGAAAGAGGATATTTTGGGAAAGCATGATGCTCCCGTTCGTTGTGTAGAGTATTCCTATGCCGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTAAAATGTTGGGACCCTAGAGGTGCAAGCGGACAGGAGCGTACTCTTGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTATCTCTTGTTGGACATCGGCTTGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGACTTGAGGAACATGTCTCTGCCTGAACAACGGAGGGAATCTTCATTGAAATATCAAACCAGATGTGTACGCAGCTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTCTCTGAAGCTAGCCAGGCAAAGAAGTATGCTTTTAAGTGTCACAGAAAATCTGAAGCTGGAAGGGATATCGTCTATCCTGTAAATGCCATGGCATTCCATCCCATATATGGTACATTCGCCACAGGAGGTTGTGATGGTTTTGTTAATGTATGGGACGGAAACAACAAAAAGAGGCTGTATCAGTATTCAAAGTATCCAACTAGCATTGCTGCACTCTCATTTAGCAGAGATGGCCGTCTCCTGGCTGTTGCATCAAGTTACACATTCGAGGAGGGACCCAAACCACAAGAACAGGATGCTATCTATGTTCGCAGTGTGAATGAGATTGAGGTGAAGCCAAAACCCAAAGCCTTTCCCAATCCTACAGCTTGA 1023 0.4673 MATTPVVSGRELTNPPSDGISNIRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFLHGGPVLDCCFHDDSSGFSASSDNTVRRLVFATGKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSLPEQRRESSLKYQTRCVRSYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKPQEQDAIYVRSVNEIEVKPKPKAFPNPTA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04272 340 SUPERFAMILY WD40 repeat-like 15 303 IPR036322 GO:0005515
Vivi2g04272 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Vivi2g04272 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Vivi2g04272 340 Gene3D - 6 334 IPR015943 GO:0005515
Vivi2g04272 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Vivi2g04272 340 PANTHER MRNA EXPORT FACTOR AND BUB3 10 326 - -
Vivi2g04272 340 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Vivi2g04272 340 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Vivi2g04272 340 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
Vivi2g04272 340 SMART WD40_4 5 45 IPR001680 GO:0005515
Vivi2g04272 340 SMART WD40_4 221 269 IPR001680 GO:0005515
Vivi2g04272 340 SMART WD40_4 87 126 IPR001680 GO:0005515
Vivi2g04272 340 SMART WD40_4 134 170 IPR001680 GO:0005515
Vivi2g04272 340 SMART WD40_4 48 85 IPR001680 GO:0005515
Vivi2g04272 340 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Vivi2g04272 340 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vivi2g04272 340 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Vivi2g04272 340 FunFam Mitotic checkpoint protein bub3, putative 5 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04272 Vivi-Chr2 156444435 156448634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04272 94 302 U-box Gene Family AT2G33340 25.114 1.19e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04272 K02180 - gmx:100808389 651.358