Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04271 ATGGAACCTGCTGAGCTTATTTCTCAAGAATGGAGTTCTCTTAGTGGACTCTACACTGCTGAGGAATCTGATTTCATGAATCAGTTACTTGGTAACTGCTCACTCCCACAACACCCCAATCAAAACTCCGATTTCGGAACTGAATCTGCATTTTGGCCAGCACACGATTCCACAACAGTTACTGTCACAAAAAATAACAACTATTCTAACTTTGCTGCTCAATTTCCTAGCTCAACTTCTGATACTAGTTGCATTAACAATACATTAACCAGCTTTGAGTATATTGCTATGGGACTTTCCGTAGATGATTCCAAATTCGGTCCATATACAACACAACCTAATGAACAATTTCTAGCTAACAAGAAATTGCAGTCCCCAAAGGAACATGAAATACTAGTTTCTGAGCCAGAAGAGAACACCGTACGAAAAGAAAATTCAATGAAAAGATCTAGGAGCTCGAATGAGGTCTCCAGGAGCAAGAGGAATGTTAAATGTAGGAAGAATATGAGATGTGGTTCTAGAAGCACTGACGATCTGACCTTAATCAGTTGTTGTTCAGAGGATGAGTCCAATTCTTCTCATGAACTACATGGAGGGTCATGTTCAAGTTTGAGCCAGAATGATTCCACAGCTTTGAAGTTAAGTGGTAAATCAAGATCTAGTCGAGGTGCTGCTACTGATCCACAAAGCCTATATGCAAGAAAAAGAAGAGAGAGAATAAATGAAAGGCTGCGAATCTTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTGTGGATGTACTCTCCCATTGCTTACAATGGAATGAACATTGGACAAGAACTTGGTATTACCCCAGCAAAAGAAACAAAGGATATGCAATAG 945 0.3958 MEPAELISQEWSSLSGLYTAEESDFMNQLLGNCSLPQHPNQNSDFGTESAFWPAHDSTTVTVTKNNNYSNFAAQFPSSTSDTSCINNTLTSFEYIAMGLSVDDSKFGPYTTQPNEQFLANKKLQSPKEHEILVSEPEENTVRKENSMKRSRSSNEVSRSKRNVKCRKNMRCGSRSTDDLTLISCCSEDESNSSHELHGGSCSSLSQNDSTALKLSGKSRSSRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGQELGITPAKETKDMQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04271 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Vivi2g04271 314 SMART finulus 230 279 IPR011598 GO:0046983
Vivi2g04271 314 MobiDBLite consensus disorder prediction 195 235 - -
Vivi2g04271 314 CDD bHLH_AtIND_like 225 287 - -
Vivi2g04271 314 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 297 - -
Vivi2g04271 314 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
Vivi2g04271 314 MobiDBLite consensus disorder prediction 195 227 - -
Vivi2g04271 314 FunFam Basic helix-loop-helix transcription factor 225 282 - -
Vivi2g04271 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 289 IPR036638 GO:0046983
Vivi2g04271 314 Gene3D - 226 282 IPR036638 GO:0046983
Vivi2g04271 314 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04271 Vivi-Chr2 156407321 156409433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04271 10 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.882 2.99e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g04271 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04271 - - mtr:11440124 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04271 2 156407321 156409433 Vivi2g04271 2 156407321 156409433 ECH
Vivi2g04271 2 156407321 156409433 Vivi1g03954 1 83432049 83433423 PCT