Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04241 ATGCTAAAGGAAAATTTTGGAGATGAACTAAAAACACTGGAGTCATTACAATTCAAGGTTGCTACAATTGAAGCTGCCACCAACAAATTCTCAAAGGAGAACGAGATAGGTAAAGGAGGATTTGGTATTGTCTACAAGGGTGTTCTTTCTGATGGACAACAAATAGCAGTAAAGAAACTGTCAATAAATTCAGGACAAGGTTCTATAGAGTTTCAAAATGAAATATTACTCATAGCCAAGCTTCAACACATAAATTTGGTGACTTTGTTAGGATTCTGTTTGGAAGAACGAGAGAAAATGCTTATATATGAGTATGTGCCTAATAAGAGTCTTGATTATTTTCTATTTGATCACAAAAAACACAGGGTGTTAGATTGGTTCGAGCGTTACAAAATTATAGGAGGAATTGCACGGGGAATTCTTTACTTACATGAGTATTCAAGACTTAAAGTCATACATCGAGATCTCAAATCTAGCAATATACTGTTGGATAATAATATGAATCCAAAAATATCTGATTTCGGTTTGGCAAGAATAGTTACAATCGATCAAGAACCAGGAAGAACTAACAGAATTGTGGGAACATATGGTTATATGTCTCCTGAATATGCAATGCATGGACAATTTTCTGAGAAGTCAGATGTGTTTAGTTTTGGGGTTATAATTATTGAGATAGTTAGCGGAAAGAAAAATGTCCGTCCCATTGAATTAGATGATTTTGATGACCTCCTAAGTATTGCTTGGAGAAAATGGAGGAGTGAAACACCATTAGAATTGTTGGACCCCGTTCTAAAAGACTCATATTCTCGTAGTGAAGTTATTAAGTGCATTCAACTTGGTTTGTTATGTGTTCAAGAAAGTCCACTTGATAGACCAACAATGGCACAAGTTGTCTCATATCTCAGTAATCTTTTAGTTGAATTACCGTTTCCTCAAGAGCCAGCATTTTCCATGGATAGGAGAACGAGGTTAAACATAACAAGAGAGTCTAGTTCAGGTCAATTTAATAGTAATTCTTTGGTTTCATCGATCAATGACATGACCAAGAGTCAATTTTTCCCTAGATAA 1068 0.3511 MLKENFGDELKTLESLQFKVATIEAATNKFSKENEIGKGGFGIVYKGVLSDGQQIAVKKLSINSGQGSIEFQNEILLIAKLQHINLVTLLGFCLEEREKMLIYEYVPNKSLDYFLFDHKKHRVLDWFERYKIIGGIARGILYLHEYSRLKVIHRDLKSSNILLDNNMNPKISDFGLARIVTIDQEPGRTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIIIEIVSGKKNVRPIELDDFDDLLSIAWRKWRSETPLELLDPVLKDSYSRSEVIKCIQLGLLCVQESPLDRPTMAQVVSYLSNLLVELPFPQEPAFSMDRRTRLNITRESSSGQFNSNSLVSSINDMTKSQFFPR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04241 355 ProSiteProfiles Protein kinase domain profile. 30 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04241 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vivi2g04241 355 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 350 - -
Vivi2g04241 355 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Vivi2g04241 355 Gene3D Phosphorylase Kinase; domain 1 3 105 - -
Vivi2g04241 355 PIRSF ILK 11 313 - -
Vivi2g04241 355 Gene3D Transferase(Phosphotransferase) domain 1 106 309 - -
Vivi2g04241 355 SUPERFAMILY Protein kinase-like (PK-like) 16 330 IPR011009 -
Vivi2g04241 355 Pfam Protein kinase domain 30 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04241 355 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 1 105 - -
Vivi2g04241 355 SMART serkin_6 30 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g04241 355 FunFam cysteine-rich receptor-like protein kinase 10 106 308 - -
Vivi2g04241 355 CDD STKc_IRAK 36 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04241 Vivi-Chr2 155974749 155977325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04241 8 355 Receptor kinase-like Gene Family AT4G11530 57.020 3.16e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi2g04241 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04241 - - cam:101500396 598.201