Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04238 ATGCCTAAACAAAGCTATAGATATGATGTGTTCATCAGTTTCAGAGGTTGTGACACACGCAACACCTTTGTTGATCATCTCTACGCTCATCTCAATAGAAAAGGTATTTTCACTTTCAAAGATGACGCACAGCTCAACAAAGGTCATTCTATTTCATCTCAACTTAAACTTGCAATTCAACAATCTCGAATTTCTATCATTATCTTCTCAAAAGATTATGCTTCATCAACATGGTGTTTGGATGAAATGGCTACTATTGCTGATTGCCATACCCAATCCAAACAAATTGTTTTCCCTGTTTTCTATGATGTTGATCCATCTCATGTACGAAAACACAAGGGGTTTTATGAGAATGCCTTTGTTTTACACACACAACAACAACAATCCCAAAACAAGGTTGATTGTTGGAAGAATGCTATGACCTGTTTGGCTGGATCAGCTGGTTGGGATGTCAGGAATAAGCCTGAGTTTGAAGAGATTGAAAAAATTGTTCAAGGTGTAATAAATTCACTGGGTCATAAATTCTCCGGTTTTGTTGATGATCTTATTGGAATACAACCTCGTGTAGAAGCCTTAGAAAGGATTTTGAAGTTAAGGTCAGGAGATTGTGGTTTTCGTGTTTTAGGAATACGGGGGATGGGAGGGATAGGAAAGACAACTCTTGCGACTGTCTTGTATGACCGAATCTCATATCAGTTTCAAGCTTCTTGCTTTATTGAGAATGTTAGCAAAATTTATAAAGATGGTGGTTGTGTTGCTGTGCAGAAACAAATTATTTGTCAAACTTTAAGAGAAAAGAATCTAGAAACTTATAGTCCTTCTGAAATATCCGGGATTATAAGAAGTAGATTACACAACATAAAGGTCCTTGTAGTTCTTGACGATATTGATCAAATTGAGCAATTACAAGAATTGCATATAAATCCCAAATTGCTTTGCGGAGGAAGTAGAATAATCATAACCACTAGAGATGAGCATATTCTTAAAGAGTATGGGGCAGATGAAGTTTACGAGGCTCAATTGATGAGTGATGGTGAAGCTCTTGACCTTCTGCATAGAAAAGCCTTCAAAAGTGATAATTCAAGCAGTGCTTTTTCGGAGCTGATTCCTCAGGTACTAAAATATGCCCAATGTCTTCCATTAGCAATAAGAGTAATTGGTTCTTTCTTATGTACCCGAAATGCCACTCAGTGGAGAGCTTCCTTGGATGGATTGCGGAATAATCCATTGGGCAATAGAGTTATGAAAGTGCTTCAGATAAGTTTTGAGGGACTAGAGGCAAGAGAGAAAGAAATATTTCTGCATATTGCTTGTTTCTTTAAAGGAGAGAAGGTGGATTATGTGAGGGGAATTCTAGATGCTTGTGGATTGCACCCTGATATTGGAATTCCACTTATTGTTGAAAAATCGCTCATAACAATAAGAAGCTCGGAAATTCATATGCATGGAATGTTGCAAGAGTTGGGGAAGCAAATTGTTCAGGGACAACATCCCTACGACCCAGAGTTCTGGAATAGATTGTGGCTTTACCGTGATTTCCATCGCGTGGCAATGACAGAAATGAAAGCACCAACTAAAGCCATAGTTCTAGATCAAAAGGAAGATGGCTTCGAATTCAATCAGTTGAAGGCTGAAGATCTATCAAAATTCGGGCACCTGAAACTGCTTATATTGTGTCAAAAGAATTTTTCAGGGGAGCCTGTATTTCTTTCTAATTCCCTATGTTATCTTTCGTGGAATGGTTATCCTTTCACTTCTTTGCCGTCAAATATTCAGCTACATGACCTCGTTGAATTGAATATGCCTGGCAGCCAGATCAAACAGTTGTGGGAAGGCAATCAGCGTCTACCTTGTTTGAAAAGGATGGATCTGAGCAACTCCAAAAATCTCACGGTAACTCCAAATTTGGAAGGGATCCAAAATCTTGAGCGGATAGATTTTACAGGATGCATAAACCTGTTGCATGTGCATCCATCAGTTGGACTTCTTACGGAACTTGTATTCTTGAGTTTGCAGAACTGTACCCGTCTGACCAGCCTTGATTTCGGCAGTGTATCAAGAGTATGGTCTCTCAGAGTTCTGCGTCTCTCTGGCTGCATAGGATTGGCAAAGACTCCAGATTTCACGGGAGCTTCAAATCTTGAGTACCTTGATATGGATCAATGTAGAAGTTTATCTAAGATCCATAAATCTATCGGAGCTCTTGCAAAGCTTAGATTCTTAAGTTTGAGAGACTGCACAAAGTTGTCTCCAAATCCTAACATCTTTGATAATATGACATCTCTTACGTCTCTGGATCTACGTGGCTGCTGGAGGTTTTCAACTCTGCCCCTGCCAAACACCACCCTTAATCCCCCTTCTCCTCTGGAATCATTGATTTTCCTGGACTTAAGCTTTTGCAATATTTCGGTAGTACCTGATTCTATTGGAGACTTAAAGAGTTTAGAAAGACTAAATTTACAGGGAAATAGGTTTAGTACACTTCCTTCTACATTCAAGAGGCTTTCCAATCTAGCATATTTAAACTTGTCACACTGTCACGAACTTAGAAGATTGCCAAAGCTCTCATCCAAGAGTGGCCAATCAGATTCACTGGGAAGGTATTTTAAAACAACATCTGGATCGCGTGATCATAGGTCTGGATTATATGTTTATGACTGTCCCAGGATAACTGAACGGTTGTTCTCTTGTGACGATCCAGGCATTCCGTTTAAATGGCTAAAAAGACTATTTAAGGAGCCTCGTCATTTCCGATGTGGCTTTGACATTGTTCTTCCTTTGCATCGTAAATATGTTGATTCACTTGGAAACCCTTCGATTCCACAGTGGTTCGATCACAAGTTTGAGGAAGGTTCAATAATAAGGATAAATAACTCTAATATGCAAGTTGATTGGGCCGGCTTTGCCTTTTGTGTGGCATTTCAAGTAGATATCTGCCATGCAGTATCTGGTTCTAAACATCGCCGTTTTCATTCGCCACTGCCAATTCCTTTTTGTCTTTCTTTTCAAAGTGAACATACAGAAGAACGCTTTGATATGCCGCTTAGTTTGGAACGAAATAAGGTGCCTGGCTCAAATTATATTTGGGCAATCTATATCTCTCGTGAACACTGCCATTTTGTGAAAACAGGAGCAAGAATCGCATTTAAAGCTGACAGAGGTTTGATCTTGAAGAAATGGGGGTTCCGTGTGCTAACCAAGGAGGGCGTAGAAAGGACACCGAGAACACAACTTCCTTTGTTGTCCATTGAGAATGTAGATGAAAGAATCAACAGATTTGAGCCTAAAATCAAGCTTCCTTACAATTGGTCAGTTTCCACCGAAGATGAAGTTGAGAATGATGAAGTCAAAGGGAAAGAAACCAACCTCTTTAATCTAGGCCTTTTGACAGGCCAACCACACTGA 3405 0.3959 MPKQSYRYDVFISFRGCDTRNTFVDHLYAHLNRKGIFTFKDDAQLNKGHSISSQLKLAIQQSRISIIIFSKDYASSTWCLDEMATIADCHTQSKQIVFPVFYDVDPSHVRKHKGFYENAFVLHTQQQQSQNKVDCWKNAMTCLAGSAGWDVRNKPEFEEIEKIVQGVINSLGHKFSGFVDDLIGIQPRVEALERILKLRSGDCGFRVLGIRGMGGIGKTTLATVLYDRISYQFQASCFIENVSKIYKDGGCVAVQKQIICQTLREKNLETYSPSEISGIIRSRLHNIKVLVVLDDIDQIEQLQELHINPKLLCGGSRIIITTRDEHILKEYGADEVYEAQLMSDGEALDLLHRKAFKSDNSSSAFSELIPQVLKYAQCLPLAIRVIGSFLCTRNATQWRASLDGLRNNPLGNRVMKVLQISFEGLEAREKEIFLHIACFFKGEKVDYVRGILDACGLHPDIGIPLIVEKSLITIRSSEIHMHGMLQELGKQIVQGQHPYDPEFWNRLWLYRDFHRVAMTEMKAPTKAIVLDQKEDGFEFNQLKAEDLSKFGHLKLLILCQKNFSGEPVFLSNSLCYLSWNGYPFTSLPSNIQLHDLVELNMPGSQIKQLWEGNQRLPCLKRMDLSNSKNLTVTPNLEGIQNLERIDFTGCINLLHVHPSVGLLTELVFLSLQNCTRLTSLDFGSVSRVWSLRVLRLSGCIGLAKTPDFTGASNLEYLDMDQCRSLSKIHKSIGALAKLRFLSLRDCTKLSPNPNIFDNMTSLTSLDLRGCWRFSTLPLPNTTLNPPSPLESLIFLDLSFCNISVVPDSIGDLKSLERLNLQGNRFSTLPSTFKRLSNLAYLNLSHCHELRRLPKLSSKSGQSDSLGRYFKTTSGSRDHRSGLYVYDCPRITERLFSCDDPGIPFKWLKRLFKEPRHFRCGFDIVLPLHRKYVDSLGNPSIPQWFDHKFEEGSIIRINNSNMQVDWAGFAFCVAFQVDICHAVSGSKHRRFHSPLPIPFCLSFQSEHTEERFDMPLSLERNKVPGSNYIWAIYISREHCHFVKTGARIAFKADRGLILKKWGFRVLTKEGVERTPRTQLPLLSIENVDERINRFEPKIKLPYNWSVSTEDEVENDEVKGKETNLFNLGLLTGQPH 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04238 1134 Gene3D - 4 177 IPR035897 -
Vivi2g04238 1134 SUPERFAMILY "Winged helix" DNA-binding domain 413 514 IPR036390 -
Vivi2g04238 1134 Pfam C-JID domain 939 1068 IPR045344 -
Vivi2g04238 1134 SUPERFAMILY L domain-like 547 854 - -
Vivi2g04238 1134 PRINTS Disease resistance protein signature 376 390 - -
Vivi2g04238 1134 PRINTS Disease resistance protein signature 207 222 - -
Vivi2g04238 1134 PRINTS Disease resistance protein signature 283 297 - -
Vivi2g04238 1134 PRINTS Disease resistance protein signature 833 849 - -
Vivi2g04238 1134 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 149 IPR035897 -
Vivi2g04238 1134 ProSiteProfiles TIR domain profile. 6 171 IPR000157 GO:0007165
Vivi2g04238 1134 SMART till_3 7 146 IPR000157 GO:0007165
Vivi2g04238 1134 Pfam TIR domain 8 171 IPR000157 GO:0007165
Vivi2g04238 1134 Gene3D Ribonuclease Inhibitor 708 897 IPR032675 -
Vivi2g04238 1134 Gene3D Ribonuclease Inhibitor 530 707 IPR032675 -
Vivi2g04238 1134 SMART LRR_typ_2 789 811 IPR003591 -
Vivi2g04238 1134 SMART LRR_typ_2 835 859 IPR003591 -
Vivi2g04238 1134 SMART LRR_typ_2 812 834 IPR003591 -
Vivi2g04238 1134 Pfam NB-ARC domain 197 423 IPR002182 GO:0043531
Vivi2g04238 1134 Gene3D - 342 426 IPR042197 -
Vivi2g04238 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 680 IPR044974 GO:0006952
Vivi2g04238 1134 Pfam Leucine Rich Repeat 595 614 IPR011713 -
Vivi2g04238 1134 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 173 - -
Vivi2g04238 1134 Gene3D - 179 335 IPR027417 -
Vivi2g04238 1134 Pfam Leucine rich repeat 795 847 IPR001611 GO:0005515
Vivi2g04238 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04238 Vivi-Chr2 155953206 155958647 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04238 183 776 WRKY Transcription Factor Family AT5G45050 31.912 1.88e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04238 - - mtr:25498786 1323.53