Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04232 ATGTATGGTCCTCCTCCCCCACCTCCTCCAACTCACTATCATAACCACATTATGAATATCTATGATAATCAGCTGCCAAGTACAAGACATGAAGATTATGAAATCATCCTCGAAGAAGAACAACCTTCAAGTGATGATCAACAGTCTAACCAACGTCCTAAAAAGAGAACTTACCGCCGCCATACACAGGAGCAGATTCAAGAAATGGAAGCTGCCTTCAGGGAGAATCCTCACCCAGATGACAAGCAAAGAAAAGAGATGGGTGCTAGGCTAGGGTTAGAGCCTCTGCAAATCAAGTTTTGGTTTCAAAACCGGCGTACTCAGCTTAAGGTTCTAAATGAAAGGGAAGAGAATAGTGCATTGAAGGCTGAGATTGAAAAACTTCGAAGTGAGATGAATAGGTACAAGGAAGCTGTAGGGAATACTGCATGCAACGTGTGTGGAAGCACAGCTACCATTGGTGACATGTCCCGTGAGGAGCAGCAACTGAAGTTGGAGAATGCTCTCTTAAGAAAAGAGCTTGAAAAGTTTGCGGGCGGAGGCGAGACATCAACGAATCCTACGGATACTCATACCATCATATCATCATCAAACAACAGCAATCAAGCGCCTTCGCGGTCAATCAATGTTCGAGTTGTAGGTGGGACTAGTAACTATAATGGAGCACAAAATGGAATGGTAGGAGAAGCATATACTGGTGCTAATGGTGGCGATCTTATAAGTTCTTCATTTCCAGCTAGAGAATATGTTGATGACAAACGCAGTATTATTGAGCTTGCTGTGTTGGGAATGGATGAACTAATGAGATTGGCCAAAACTTGTGGACCCCCTCTATGGCTCCCCACAAACTATTACACTGAGATTCTAAACGGAGATGAGTACATGAAGAATTTCCTTAGGGTTAATGGACCTAATCCATTTGGGTTAAGGCCTGAAGGTTCTAAAGAGTCTGGTGTGATCATTATGAATCCTATTAATCTTGTTGATATCCTTATGGATGTGAATCGATGGTCAACTATGTTTTGCGGTATTGTTGCAAGAGCAGCAACAAACAAAGTACTCTCAACTGGTGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGATAGCTGAATTTCAAGTTCCTTCGCCATTTGTTCCTATTCGCGAAAACTATTTCGTGCGATACTGTAAACTGCATGAAGACGGTATATGGGCAGTGGTTGATGTTTCATTGGATAATCTTCTCCCTGCATCTAGCAGTAGTTCTGTCCCGAGACCCCAAAGAAGACCCTCTGGTTGTTTAATTCAAGAACTACCAAATGGTTACTCTAAGGTTACATGGATTGAACATACTCTAGTGAACGATAACGCGGTGCAGAATTTTTACACACCTCTAATTAATTCTGGACTCGCGTTTGGCGCTAAGCGCTGGGTGGCTACGTTACAACGACAATGCGAACGTCTGGCGTGTTCAATGTCCAACAACATACCGATTGCTGGAGACCTCGGAGTTATGATGAGTCCAGAGGGAAAGAAAAGTATGTTGAAGCTCGCGGAACGGATGGTGACTAGCTTTAGTACTAGTATTGGTGCTGCTTCAAATCATGCTTGGACAAATGTACACTCAGATGGATCAGAGCATGTGGTTAAGGTGATGACAAAGAAATACGTCGATGAATCGGGCAGTGGCGGTAGATCCCCCGGTGTAGTGCTTAGTACCGCTACTTCTTTTTGGCTTCCCATTCCTCCAAGAAGGACTTTTGATTTTCTTCGTGATGAAAACACCAGATGTCAGTGGGATATTCTCTCGAACGGAGGCATAGTTACAGAAATGGCTCACATTGCGAATGGTCGTGATTCTGGAAGCGCGGTCTCTTTACTTCGTGTTAACAGTTCGAACTCAATGCAGAGTAATATGGTGATACTGCAAGAAAGTTGTGCTGATATAACAGGTTCATATGTAGTATATGCACCTGTGGATATATCTTCAATGAATGTAGTCTTGAATGGAGAAGACTCGAATACTGTTTCTCTAATTCCGTCCGGATTTGCCATATTTCCGGACGGAATTCTACAGAATCGAGGACCGATAATGGATGTCGGGTCAGGAGGTTCTCTTATCACAGTTGGATTTCAGATTTTAGTTGATTCTGTTCCTCATGCAAGACTGGCTCTGGGTTCTGTCAGCACTGTTCAGCAGTTGATCAAGTCCACTGTGGAAAAGATTAAGGTTGCAGTTATGCCTAATGGAACACTTAATGTCACCTAA 2253 0.4328 MYGPPPPPPPTHYHNHIMNIYDNQLPSTRHEDYEIILEEEQPSSDDQQSNQRPKKRTYRRHTQEQIQEMEAAFRENPHPDDKQRKEMGARLGLEPLQIKFWFQNRRTQLKVLNEREENSALKAEIEKLRSEMNRYKEAVGNTACNVCGSTATIGDMSREEQQLKLENALLRKELEKFAGGGETSTNPTDTHTIISSSNNSNQAPSRSINVRVVGGTSNYNGAQNGMVGEAYTGANGGDLISSSFPAREYVDDKRSIIELAVLGMDELMRLAKTCGPPLWLPTNYYTEILNGDEYMKNFLRVNGPNPFGLRPEGSKESGVIIMNPINLVDILMDVNRWSTMFCGIVARAATNKVLSTGVAGNYNGALQVMIAEFQVPSPFVPIRENYFVRYCKLHEDGIWAVVDVSLDNLLPASSSSSVPRPQRRPSGCLIQELPNGYSKVTWIEHTLVNDNAVQNFYTPLINSGLAFGAKRWVATLQRQCERLACSMSNNIPIAGDLGVMMSPEGKKSMLKLAERMVTSFSTSIGAASNHAWTNVHSDGSEHVVKVMTKKYVDESGSGGRSPGVVLSTATSFWLPIPPRRTFDFLRDENTRCQWDILSNGGIVTEMAHIANGRDSGSAVSLLRVNSSNSMQSNMVILQESCADITGSYVVYAPVDISSMNVVLNGEDSNTVSLIPSGFAIFPDGILQNRGPIMDVGSGGSLITVGFQILVDSVPHARLALGSVSTVQQLIKSTVEKIKVAVMPNGTLNVT 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04232 750 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vivi2g04232 750 Coils Coil 153 173 - -
Vivi2g04232 750 CDD homeodomain 55 110 IPR001356 GO:0003677
Vivi2g04232 750 FunFam Homeobox-leucine zipper protein HDG1 41 128 - -
Vivi2g04232 750 SMART START_1 258 482 IPR002913 GO:0008289
Vivi2g04232 750 SUPERFAMILY Bet v1-like 503 734 - -
Vivi2g04232 750 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Vivi2g04232 750 ProSiteProfiles START domain profile. 249 485 IPR002913 GO:0008289
Vivi2g04232 750 Gene3D - 40 127 - -
Vivi2g04232 750 SUPERFAMILY Bet v1-like 283 483 - -
Vivi2g04232 750 SMART HOX_1 54 116 IPR001356 GO:0003677
Vivi2g04232 750 CDD START_ArGLABRA2_like 253 481 - -
Vivi2g04232 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 741 IPR042160 -
Vivi2g04232 750 MobiDBLite consensus disorder prediction 23 63 - -
Vivi2g04232 750 Gene3D - 316 486 IPR023393 -
Vivi2g04232 750 Pfam START domain 278 482 IPR002913 GO:0008289
Vivi2g04232 750 Coils Coil 104 145 - -
Vivi2g04232 750 SUPERFAMILY Homeodomain-like 41 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04232 Vivi-Chr2 155897065 155901797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04232 10 741 Homeobox Transcription Factor Family AT4G04890 58.333 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g04232 START 2.8e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04232 K09338 - tcc:18597106 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04232 2 155897065 155901797 Vivi2g04232 2 155897065 155901797 ECH