Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04217 ATGCTGTCGAATCATATCCAAAACGGAATCGAAACGGCGAGGCTCGCTTGGTCACGGATTCCGAACTCCGATGAATCAGAGTTCGTTGATGACGGCGTTGGTCTCCGGAAGAAGAACGACGGAAGCGCTGTCGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGGGAAGAACAGGCGCATAGAAGAAGGAAGCTGTACGTGAGTTACTTGCTGGTAGTGAAATGGTTCTTTGCGTTGCTCATTGGCATTTTTACTGGATTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAATACTCGATCACATTTAATATAATTCAGAAATCATATGTCGCTGGCTTTTTCGTATATGTTTCGATCAACTTGGTTTTAGTTTACTCTTCGGTATATATCATCACACAATTTTCACCAGCAGCTGCTGGGTCGGGTATTCCTGAAATCAAGGGTTACTTAAACGGCGTTGATACACACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGTGGCCTCGCTTTGGGTAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGATCGGGATCGCCGTGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGTGTGTTGTTTGCATTGGAAGAGGTTACATCCTGGTGGAGGAGCCAACTAATGTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTGCGAACTGCGATGGGGTGGTGTAAGAGCGGAAAATGTGGACATTTTGGATCAGGCGGGTTCATAATATGGGATGTATCAGATGGTCAAGAGGATTATTCGTTTGCAGAGTTATTCCCAATGGCTATTATTGGGATTATTGGAGGTCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCATGCCTTGTCTCTCTTCTAACATCAGTTATTTCATTTGGCTTGCCGCTTCTAAGAAAATGCAGTCCCTGCCCTGAACCTGATCCTACATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTTTTGTAGCAAAGACAACGAATACAATGATCTTGCTACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTTAGTGCAAAAACAATAAACGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTCATGTTTTATGGTTTAGCAGTTGTCACGTTTGGTACTGCCGTGCCAGCTGGTCAATTTGTTCCCGGTATTATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATTGAAGAGGGAACATATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGAATGACTGTGTCGCTCTGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCCCTTATTATGCTCGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGACGGCATCTATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTGCTAGAATCAAAGCCTAAATATGAGATGAGGAACATGATAGCAAAGGAGGCGTGTGGGAGTGGAAGGGTGGTATCTTTCCCTCGTGTTGTTAAGGTTCCAGATGTATTTTCCATTCTGCAGAGCAACAAACACAACGGTTTTCCAGTGATTGATCACACAAGAAGCGGAGAACCACTTGTTATTGGATTAGTGCTTCGAAGTCATTTATTGGTCATTCTGCAGTCTAAGGTTGATTTTCAGCATAGTCCTTTACCCTCTGATCCAAGAAGTGGAGGCAGATCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCCGTTTCTAGTAAAGGAATATGTCTTGACGATATACACCTAACATCAGAGGACTTGGAAATGTACATAGATCTAGCCCCATTTTTGAATCCCTCACCGTATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTCTTGGTTTGATAACCAGAAAAGATTTGTTAATTGAGGACGCAGAAAATGTGAATACATTAGAGCTACAGGCAACTACTAACTCAGCATCAGAATAG 2328 0.4162 MLSNHIQNGIETARLAWSRIPNSDESEFVDDGVGLRKKNDGSAVESLDYEVIENFAYREEQAHRRRKLYVSYLLVVKWFFALLIGIFTGFAAVFINISVENFAGWKYSITFNIIQKSYVAGFFVYVSINLVLVYSSVYIITQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELFPMAIIGIIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSLLTSVISFGLPLLRKCSPCPEPDPTSGIECPRPPGMYGNYVNFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYGLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLESKPKYEMRNMIAKEACGSGRVVSFPRVVKVPDVFSILQSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRSGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDAENVNTLELQATTNSASE 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04217 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 754 - -
Vivi2g04217 775 Pfam CBS domain 708 755 IPR000644 -
Vivi2g04217 775 ProSiteProfiles CBS domain profile. 707 764 IPR000644 -
Vivi2g04217 775 SMART cbs_1 710 758 IPR000644 -
Vivi2g04217 775 SMART cbs_1 596 648 IPR000644 -
Vivi2g04217 775 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 Pfam Voltage gated chloride channel 135 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi2g04217 775 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Vivi2g04217 775 Gene3D Clc chloride channel 70 576 - -
Vivi2g04217 775 CDD ClC_6_like 45 575 - -
Vivi2g04217 775 Gene3D - 597 760 IPR046342 -
Vivi2g04217 775 FunFam Chloride channel ClC3 69 386 - -
Vivi2g04217 775 SUPERFAMILY Clc chloride channel 61 577 IPR014743 -
Vivi2g04217 775 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g04217 775 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g04217 775 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g04217 775 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g04217 775 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi2g04217 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 33 759 - -
Vivi2g04217 775 FunFam Chloride channel protein 699 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04217 Vivi-Chr2 155487835 155498054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04217 1 775 Ion Channels AT5G26240 82.990 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04217 K05016 - gmx:100811908 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04217 2 155487835 155498054 Vivi2g04217 2 155487835 155498054 ECH